Locus 3012

Sequence ID 2R_DroMel_CAF1
Location 10,387,644 – 10,387,762
Length 118
Max. P 0.830329
window4969

overview

Window 9

Location 10,387,644 – 10,387,762
Length 118
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 84.36
Mean single sequence MFE -32.40
Consensus MFE -28.11
Energy contribution -27.57
Covariance contribution -0.55
Combinations/Pair 1.14
Mean z-score -1.80
Structure conservation index 0.87
SVM decision value 0.71
SVM RNA-class probability 0.830329
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10387644 118 - 20766785
AUAUU--UAAAAUUCGUUUUGAGUCGGGCUCACCUGCUAUGACCAGUUCCAUGUACCGCAGCUCCUGCAUGGAAUCAUAUGUGAAUUCACCGUUGUGUAACCGCAGAGCCUGGUCGAUUU
.....--...........((((.((((((((......(((((....(((((((((..........))))))))))))))((((....(((....)))....))))))))))))))))... ( -32.60)
>DroSim_CAF1 12259 107 - 1
AUAU-------------UUUGAGUCGGUCUCACCUGCAAUGACCAGUUCCAUGUAGCGCAGCUCCUGCAUGGAAUCAUAUGUGAAUUCACCCUGAUGUAACUUCAGAGCCUGGUCGAUUU
....-------------...(((((((.....))......((((((((((((((((........))))))))))......(((....))).((((.......))))...))))))))))) ( -31.30)
>DroYak_CAF1 13343 120 - 1
AUAUUUUUUGAAUUAAUUUCGAGUCAGGCUCACCUGCAAUGACCAGUUCCAUGUACCGCAGCUCCUGCAUGGAAUCAUAUGUGAAUUCGCCCUGAUGCAAUUUCAGAGCCUGGUCGAUUU
..................((((.((((((((....(((((((....(((((((((..........))))))))))))).)))(((...((......))...))).))))))))))))... ( -33.30)
>consensus
AUAUU__U__AAUU__UUUUGAGUCGGGCUCACCUGCAAUGACCAGUUCCAUGUACCGCAGCUCCUGCAUGGAAUCAUAUGUGAAUUCACCCUGAUGUAACUUCAGAGCCUGGUCGAUUU
..................((((.((((((((..............((((((((((..........))))))))))(((..(((....)))....)))........))))))))))))... (-28.11 = -27.57 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:11 2006