Locus 3011

Sequence ID 2R_DroMel_CAF1
Location 10,386,844 – 10,386,964
Length 120
Max. P 0.555011
window4968

overview

Window 8

Location 10,386,844 – 10,386,964
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 93.06
Mean single sequence MFE -35.48
Consensus MFE -30.67
Energy contribution -32.55
Covariance contribution 1.88
Combinations/Pair 1.03
Mean z-score -1.45
Structure conservation index 0.86
SVM decision value 0.04
SVM RNA-class probability 0.555011
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10386844 120 - 20766785
AAGUUGGCGAAGUCCUGUAUGAGGAUCUGUUUGGCCAGUUCCAGAUCUGUGACCAAGACCACAGGUCUCAACAUCAUAAAAAAUCCGGCAAAGGGUGCUCCAUUGCCCUUGAACUUCUCA
......(.(((((.(..((((((((.(((......))).)))(((((((((........))))))))).....)))))........(((((.((.....)).)))))...).))))).). ( -34.90)
>DroSim_CAF1 11459 120 - 1
AAGUUGGCGAAAUCCUGAAUGAGGAUCUGUUUGGCCAGUUCCAGAUCUGUGACCAAGACCACAGGUCUCAGCAUCAUAAAGAAUCCGGCGAAGGGUGCUCCAUUGCCCUUGAACUUCUCA
....((((.(((((((.....)))))....)).))))((((.(((((((((........)))))))))..................(((((.((.....)).)))))...))))...... ( -33.70)
>DroEre_CAF1 12368 120 - 1
AAGUUGGCGAAAUCCUGUAUGAGGACCUGCUUGGCCAGUUCCAGAUCUGUGACCAAGACCACUGGUCUCAGCAUCAUAUAGAAACCCGCAAAGGGUGCUCCAUUGCCCUUGAACUUCUCA
(((((.(((.....(((((((((((.(((......))).)))....(((.(((((.......))))).)))..)))))))).....))).((((((........)))))).))))).... ( -37.40)
>DroYak_CAF1 12543 120 - 1
AAGUUGGCGAAAUCCUGUAUGAGGAUCUGCUUGGCCAGUUCCAGAUCCGUGACUAAGACCACAGGCCUUAGCAUCAUAUAGAAACCAGCAAAGGGUGCUCCAUUGCCCUUGAACUUCUCA
..(((((.......(((((((((((((((............))))))).((.(((((.((...)).)))))))))))))))...))))).((((((........)))))).......... ( -35.90)
>consensus
AAGUUGGCGAAAUCCUGUAUGAGGAUCUGCUUGGCCAGUUCCAGAUCUGUGACCAAGACCACAGGUCUCAGCAUCAUAAAGAAACCGGCAAAGGGUGCUCCAUUGCCCUUGAACUUCUCA
..(((((.......(((((((((((.(((......))).)))(((((((((........))))))))).....))))))))...))))).((((((........)))))).......... (-30.67 = -32.55 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:10 2006