Locus 3010

Sequence ID 2R_DroMel_CAF1
Location 10,380,039 – 10,380,145
Length 106
Max. P 0.717761
window4967

overview

Window 7

Location 10,380,039 – 10,380,145
Length 106
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 78.79
Mean single sequence MFE -41.42
Consensus MFE -22.49
Energy contribution -24.55
Covariance contribution 2.06
Combinations/Pair 1.19
Mean z-score -1.97
Structure conservation index 0.54
SVM decision value 0.39
SVM RNA-class probability 0.717761
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10380039 106 + 20766785
UUUCCC---UGCUUAUUCUGGAUUCGAGCCGAGUUAGCCAACUUGGCGCGCAGCUCCUCCAACGUUGCCUUCUUGGGCGGCGACCCAGAUUUCUUUGUGGGCUAGGGAU
..((((---((((((((((((...((.((((((((....)))))))).))............((((((((....))))))))..))))).......)))))).))))). ( -43.91)
>DroPse_CAF1 5792 109 + 1
UUACCGGAUAGCUUGUUGUGGAGACGCGCAGACUUGGCCAGCUUGGCGCGCAGCUCAUCGAGUGAUGGCCUCUUGAGCUGCGAAUUUGUUUUGGAUUGUGGCUACAGAA
........(((((.((((((....)))(((((....(((.....))).(((((((((..(((.(....)))).)))))))))..)))))....)))...)))))..... ( -35.80)
>DroSec_CAF1 5709 106 + 1
UUUCCC---UGCUUAUUCUGGAUUCGAGCCGAGUUAGCCAACUUGGCGCGCAGCUCCUCCAACGUUGCCUUCUUGGGCGGUGAGCCGGAUUUCUUUGUGGGCUGGGGAG
.(((((---.((((((...(((((((.((((((((....)))))))).....((((..((......((((....)))))).)))))))))))....)))))).))))). ( -41.20)
>DroEre_CAF1 5732 106 + 1
UUUCCC---UGCUUAUUCUGGAUUCGAGCCGAGUUGGCCAACUUGGCGCGCAGUUCCUCCAACGUUGCCUUCUUGGGCGGCGAGCCAGAUUUCUUUGUGGGCUAGGGAG
..((((---(((((((((((((((((.((((((((....)))))))).)).)))........((((((((....))))))))..))))).......)))))).))))). ( -45.01)
>DroYak_CAF1 5770 106 + 1
UUUCCC---UGCUUAUUUUGGAUUCGAGCGGAGUUGGCCAACUUGGCGCGCAGCUCCUCCAACGUUGCCUUCUUGGGCGGCGAGCCAGAUUUCUUCGUGGGCUGGGGAU
.(((((---.((((((...(((.((..((((((((((((.....)))...))))))).....((((((((....)))))))).))..)).)))...)))))).))))). ( -46.80)
>DroPer_CAF1 5795 109 + 1
UUACCGGAUAGCUUGUUGUGGAGACGCGCAGACUUGGCCAGCUUGGCGCGCAGCUCAUCGAGUGAUGGCCUCUUGAGCUGCGAAUUUGUUUUGGAUUGUGGCUACAGAA
........(((((.((((((....)))(((((....(((.....))).(((((((((..(((.(....)))).)))))))))..)))))....)))...)))))..... ( -35.80)
>consensus
UUUCCC___UGCUUAUUCUGGAUUCGAGCCGAGUUGGCCAACUUGGCGCGCAGCUCCUCCAACGUUGCCUUCUUGGGCGGCGAGCCAGAUUUCUUUGUGGGCUAGGGAA
..((((....((((((...(((.((((((.(.....(((.....)))...).))))......((((((((....)))))))).....)).)))...))))))..)))). (-22.49 = -24.55 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:09 2006