Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,023,182 – 2,023,272 |
Length | 90 |
Max. P | 0.864980 |
Location | 2,023,182 – 2,023,272 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 84.60 |
Mean single sequence MFE | -27.55 |
Consensus MFE | -20.22 |
Energy contribution | -20.58 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.26 |
Mean z-score | -3.33 |
Structure conservation index | 0.73 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2023182 90 - 20766785 GCUUCGCUUCGAUGGCGACAUCUUCUUAAAAUGAAAAUAAAACGAAA---AGUGCCAAAAAUCGCGUGUUGAUAACAGCGCGCGAAAUGCAGG ((..(((((.((((....))))(((.......)))...........)---)))).......((((((((((....))))))))))...))... ( -25.40) >DroPse_CAF1 13087 79 - 1 GCUUCGCUUCGCUGGCGACAUCUUCAUGAAA-------------AAAA-AAGUGCCAAAAAUCGCGUGUUGAUAACAGCGCGUGAAGCAGGGG .((..(((((((((((.((............-------------....-..))))))........((((((....)))))))))))))..)). ( -24.27) >DroSim_CAF1 8543 93 - 1 GCUUCGCUUCGAUGGCGACAUCUUCAUAAAAUGAAAAUAAAACGAAAAGAAGUGCCAAAAAUCGCGUGUUGAUAACAGCGCGCGAAAUGGAGG (((((..(((((((....))))(((((...)))))........)))..))))).(((....((((((((((....))))))))))..)))... ( -31.50) >DroEre_CAF1 8330 92 - 1 GCUCCGCUUCGAUGGCGACGUCUUCAUAAAAUGAAAAUGAAAUGAAAA-AAGUGACAAAAAUCGCGUGUUGAUAACAGCGCGCGAAUUGGGGG .((((((((.((((....))))(((((...((....))...)))))..-))))........((((((((((....))))))))))...)))). ( -30.60) >DroYak_CAF1 11474 92 - 1 GCUCCGCUUCGAUGGCGACAUCUUCAUAAAAUGAAAAUAAAAUGAAAA-AAGUGGCAAAAUUCGCGUGUUAAUAACAGCGCGCGAAAUGGAGG .(((((((.(((((....))))(((((...((....))...)))))..-..).)))....((((((((((......))))))))))..)))). ( -31.40) >DroAna_CAF1 8756 89 - 1 GAUUCGCUUCGAUGGCGACAUCUUCAUAAAAUAAAAAUGCAA---AAA-AAGUGCCAAAAAUCGCGUGUUGAUAACAGCGCGGGUAAUGGGGC ((((((((.....))))).)))....................---...-..((.(((...(((.(((((((....))))))))))..))).)) ( -22.10) >consensus GCUUCGCUUCGAUGGCGACAUCUUCAUAAAAUGAAAAUAAAA_GAAAA_AAGUGCCAAAAAUCGCGUGUUGAUAACAGCGCGCGAAAUGGAGG .(((((....((((....)))).......................................((((((((((....))))))))))..))))). (-20.22 = -20.58 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:57 2006