Locus 3008

Sequence ID 2R_DroMel_CAF1
Location 10,377,362 – 10,377,461
Length 99
Max. P 0.545030
window4965

overview

Window 5

Location 10,377,362 – 10,377,461
Length 99
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 82.65
Mean single sequence MFE -31.95
Consensus MFE -25.26
Energy contribution -25.48
Covariance contribution 0.23
Combinations/Pair 1.32
Mean z-score -1.36
Structure conservation index 0.79
SVM decision value 0.02
SVM RNA-class probability 0.545030
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10377362 99 - 20766785
GCCAAGUGUCACGGAAAUCGUCGACGACGACGAUGAGGACGAAUACGUUCCGGGCAAUGUGACACGUGCGGACAUGGGCAAC---------GAGUCA---CAGGACAAAAC
.((...((((.((((.(((((((....)))))))....(((....))))))))))).((((((.(((((........)).))---------).))))---))))....... ( -34.50)
>DroSim_CAF1 3048 99 - 1
GCCAAGUGUCACGGAAAUCGUCGACGACGACGAUGAGGACGAGUACGUUCCGGGCAAUGUGACACGUGCGGACAUGGGCACC---------GAGUCG---CAGGACAAAAC
.((..((((((((...(((((((....)))))))(.(((((....))))))......)))))))).((((.((.(((...))---------).))))---))))....... ( -34.50)
>DroEre_CAF1 3089 99 - 1
GCCCAGUGUCACGGAAAUCGUCGACGACGACGAUGAGGACGAGUAUGUUCCGGGAAACGUGACACGAGCUGACAUGGGCAAC---------GAGUCA---CAGGACAAGAC
(((((((((((((...(((((((....)))))))(.((((......)))))......))))))))(......).)))))...---------..(((.---...)))..... ( -35.30)
>DroWil_CAF1 3048 111 - 1
GCCCAGUGUCACGGAAAUCGUCGACGAUGAUGAUGAUGAUGAGUAUGUGCCUGCCAAUGUGACACGGUUAGAAAUGGGCGGCGUCAACGAUGAGUCAUCUCAAGAAAAACC
((((.((((((((...((((((......)))))).....((.(((......))))).))))))))....(....)))))(((.(((....))))))............... ( -28.20)
>DroYak_CAF1 3088 99 - 1
ACCUAGUGUUACGGAAAUCGUCGACGACGACGAUGAGGACGAGUAUGUUCCGGGAAACGUGACACGUGCGGACAUGGGCAAC---------GAGUCA---CAGGACAAAAC
.....((((((((...(((((((....)))))))(.((((......)))))......))))))))((.(.(((.(.(....)---------.)))).---..).))..... ( -31.20)
>DroAna_CAF1 3060 99 - 1
GCCCAGCGUCACAGAAAUCGUCGACGACGAUGAUGAUGACGAGUACGUCCCUGGCAAUGUGACAAGAGCGGAAAUGGGAAAU---------GAGUCC---CAGGACAAGAC
..((...((((((...(((((((....)))))))...((((....))))........))))))...........(((((...---------...)))---))))....... ( -28.00)
>consensus
GCCCAGUGUCACGGAAAUCGUCGACGACGACGAUGAGGACGAGUACGUUCCGGGCAAUGUGACACGUGCGGACAUGGGCAAC_________GAGUCA___CAGGACAAAAC
(((((((((((((...(((((((....)))))))..(((((....))))).......)))))))).........)))))..............(((.......)))..... (-25.26 = -25.48 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:07 2006