| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,376,826 – 10,376,921 |
| Length | 95 |
| Max. P | 0.619448 |
| Location | 10,376,826 – 10,376,921 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 82.82 |
| Mean single sequence MFE | -35.38 |
| Consensus MFE | -21.31 |
| Energy contribution | -22.40 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.619448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10376826 95 + 20766785 CUGCUUCUCGCCAUUCAAUUCCGCAUCCGUAUCGGUGUUUGCAUCACCCUG------CUCCAACUCGUCCGCCUCAUUGGCGGGCAGGGAGAGCGAGGUCA .....((((((...........(((.(((...)))....))).((.(((((------(..........(((((.....))))))))))).))))))))... ( -34.10) >DroSec_CAF1 2527 95 + 1 CUGCUUCUCGCCAUUCAAUUCCGCAUCCGUAUCGGCGCUUGCAUCACCCUG------CUCCACCUCGUCCGCCUCAUUGGCGGGCAGGGAGAGCGAGGUCA .(((....((((.....................))))...)))..(((.((------(((..(((.(((((((.....))))))))))..))))).))).. ( -37.80) >DroSim_CAF1 2519 95 + 1 CUGCUUCUCGCCAUUCAAUUCCGCAUCCGUAUCGGCGUUUGCAUCACCCUG------CUCCACCUCGUCCGCCUCAUUGGCGGGCAGUGAGAGCGAGGUCA ..(((((...............(((..(((....)))..)))........(------((((((...(((((((.....))))))).))).))))))))).. ( -35.40) >DroEre_CAF1 2554 95 + 1 CUGCUUCUCCCCGUUCAAUUCCGCAUCUGUAUCGACGGUUACAUCUCCCUG------CUCCACCUCGUCCGCCUCAUUGGCGGGCAGGGAGAGCGAGGUCA ..(((((...(((((..................)))))............(------(((..(((.(((((((.....))))))))))..))))))))).. ( -34.17) >DroYak_CAF1 2553 95 + 1 CUGCUUCUCCCCGUUCAAUUCAGCAUCCGUAUCGACGGUUGCAUCUCCCUG------CUCCACCUCGUCUGCCUCAUUGGCGGGCAGGGAGAGCGAGGUCA ..(((((...............(((.((((....)))).)))........(------(((..(((.(((((((.....))))))))))..))))))))).. ( -38.20) >DroMoj_CAF1 2747 98 + 1 CGGAUUCUCACCAUUAAAAUCGGCCUCGCUGCUGGCUGCUGCAGCAACUGGCUCCAGUUCCAGCUCAUC---GUCAUUGGCUGGCAAUGAGAGAGAUGUCA ..(((((((.(((((....((((((.((..(((((..((((.(((.....))).)))).)))))....)---).....)))))).)))).).)))).))). ( -32.60) >consensus CUGCUUCUCGCCAUUCAAUUCCGCAUCCGUAUCGGCGGUUGCAUCACCCUG______CUCCACCUCGUCCGCCUCAUUGGCGGGCAGGGAGAGCGAGGUCA ..(((.(((((...........(((..(((....)))..)))........................(((((((.....))))))).))))))))....... (-21.31 = -22.40 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:06 2006