| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,368,594 – 10,368,695 |
| Length | 101 |
| Max. P | 0.564843 |
| Location | 10,368,594 – 10,368,695 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 84.16 |
| Mean single sequence MFE | -29.92 |
| Consensus MFE | -22.09 |
| Energy contribution | -23.53 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.564843 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10368594 101 - 20766785 UAUGGGAUGCAUUACACCUAAUAUGGAUUGCUAUUUGCUGAGGAACGGUUCCUGCAACGUUUUGUACAGCUUCUUGGCCUUCCGGGGACCCAGUCCCAUCA .(((((((................(((..((((...((((.((((((..........))))))...))))....))))..)))((....)).))))))).. ( -31.30) >DroSec_CAF1 768 101 - 1 UAUGGGAUGCAUUACUCCUAAUAUAGAUUGCUAUUUGCUGAGGAACGGUUCCUGCAAGGUUUUGUACAGCUUCUUGGCCUUCCGGGGACCCAGUCCCAUCA .(((((((.......((((...((((....))))......))))..((((((((.((((((..(........)..)))))).))))))))..))))))).. ( -34.20) >DroSim_CAF1 768 101 - 1 UAUGGGAUGCAUUACACCUAAUAUAGAUUGCUAUUUGCUGAGGAACGGUUCCUGCAAGGUUUUGUACAGCUUCUUGGCCUUCCGGGGACCCAGUCCCAUCA .(((((((........(((...((((....))))......)))...((((((((.((((((..(........)..)))))).))))))))..))))))).. ( -33.00) >DroEre_CAF1 770 101 - 1 UAUGAAAUGCGUUACACACAAUGAAAAUUUCUAUUUGCUAAGGAAUGGUUCCUGCAAGGUUUUGUACAGCUUCUUGGCCUUCCGGGGACCCAGUCCCAUCA ...(((((.((((......))))...)))))..........(((..((((((((.((((((..(........)..)))))).))))))))...)))..... ( -27.60) >DroYak_CAF1 768 100 - 1 UAUGGGAUGCGUUA-ACCUAAUAAAGAUUGCUAUUUGCUGAGGAAAGGUUCCUGCAAGGUUUUGUACAGCUUCUUGGCCUUCCGGGGACCCAGUCCCAUCA .(((((((......-.(((.....((((....))))....)))...((((((((.((((((..(........)..)))))).))))))))..))))))).. ( -32.30) >DroAna_CAF1 694 90 - 1 U---------AUAACACC--AGAUGGAAAGCUACUUGCUAAGAAAUGGUUCUUGGAGGGUUUUAUGUAACUUUUUGGCCUUGCGGGGUCCCAAGCCUAUCA .---------........--.(((((..(((.....)))......(((.(((((.((((((..(........)..)))))).)))))..)))...))))). ( -21.10) >consensus UAUGGGAUGCAUUACACCUAAUAUAGAUUGCUAUUUGCUGAGGAACGGUUCCUGCAAGGUUUUGUACAGCUUCUUGGCCUUCCGGGGACCCAGUCCCAUCA .(((((((.....................((.....))........((((((((.((((((..(........)..)))))).))))))))..))))))).. (-22.09 = -23.53 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:05 2006