Locus 3005

Sequence ID 2R_DroMel_CAF1
Location 10,366,305 – 10,366,425
Length 120
Max. P 0.989187
window4962

overview

Window 2

Location 10,366,305 – 10,366,425
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 72.56
Mean single sequence MFE -42.47
Consensus MFE -18.89
Energy contribution -19.25
Covariance contribution 0.36
Combinations/Pair 1.43
Mean z-score -2.52
Structure conservation index 0.44
SVM decision value 2.15
SVM RNA-class probability 0.989187
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10366305 120 - 20766785
AGAUGGGUGGCUCCAUCAAAAAUCUCGAAACCCAGCUCAGCGCCAAGCGGGCACUAGAAGCUACCGCUACGGGUAGCUUGAAGGCGGCCCAGGGAACGAUUCAGCAAGAUGAGAAGAAAA
.((((((....)))))).....(((((...(((.(((........)))((((.((..((((((((......))))))))..))...)))).)))......((.....)))))))...... ( -41.00)
>DroPse_CAF1 90554 120 - 1
AGAUGGGUGGAUCGAUAAAGGAGCUCGAGGCGCAACUGAGCGCUAAGCGUGCCCAGGAGGCCAAAGCCUCGGGCAGCCUGAAGGCAGCGCAGGGCACCGUUGAACAAGACCAGCGGAAGA
...(((.((..(((((...((.((((..(((((......)))))..((((((((..(((((....))))))))).(((....))).)))).)))).))))))).))...))).(....). ( -50.20)
>DroGri_CAF1 110196 120 - 1
AGAUGGGCGGCACUCUCAAGGCGUUGGAGACAGAACUCGCUGCCAAGCGUGCCGUCGAGGCAACUGCCUCGGGCAGUCUGAAAGCAGCCAAGGGCACCAUUGAACAGGAUGAAAAGAAAA
.((((((((((((.((...(((((((....)))....))))....)).)))))))((((((....))))))(((.((......)).))).......)))))................... ( -42.20)
>DroWil_CAF1 135571 120 - 1
AAAUGGGUGGCAGCAUCAAAGGCUUGGAGGCGGAACUAACAGCAAAGCGAGCUUUGGAGGCCACAGCAUCUGGUAGUUUGAAAGCCGCCCAGGGUACUAUACAGCAGGAAGAGAAAAAAA
...((((((((.((.((((....))))..)).((((((.((((((((....)))))...((....))..))).))))))....))))))))............................. ( -31.70)
>DroAna_CAF1 85007 120 - 1
AAAUGGGUGGUUCGCUCAAAGAUCUGGAAGCGCAACUAAGUGCCAAGCGGGCACUGGAAGCAACGGCUUCUGGAAGUUUAAAGGCAGCCCAAGGAACCAUUCAACAAGAUGAAAAGAAAA
...(((((((((((((((......))...((((......))))..)))((((.(..(((((....)))))..)..(((....))).))))...))))))))))................. ( -39.50)
>DroPer_CAF1 91108 120 - 1
AGAUGGGUGGAUCGAUAAAGGAGCUCGAGGCGCAACUGAGCGCUAAGCGUGCCCAGGAGGCCAAAGCCUCGGGCAGCCUGAAGGCAGCGCAGGGCACCGUUGAACAAGACCAGCGGAAGA
...(((.((..(((((...((.((((..(((((......)))))..((((((((..(((((....))))))))).(((....))).)))).)))).))))))).))...))).(....). ( -50.20)
>consensus
AGAUGGGUGGCUCGAUCAAAGAGCUCGAGGCGCAACUAAGCGCCAAGCGUGCCCUGGAGGCCACAGCCUCGGGCAGCCUGAAGGCAGCCCAGGGCACCAUUCAACAAGAUGAGAAGAAAA
...(((((..............(((((((((.........(((...))).(((.....)))....))))))))).(((....))).)))))............................. (-18.89 = -19.25 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:04 2006