Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,358,563 – 10,358,663 |
Length | 100 |
Max. P | 0.770532 |
Location | 10,358,563 – 10,358,663 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 76.97 |
Mean single sequence MFE | -35.00 |
Consensus MFE | -22.99 |
Energy contribution | -23.93 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.34 |
Mean z-score | -1.42 |
Structure conservation index | 0.66 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.770532 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10358563 100 - 20766785 UAUGCGGGCAUUGUCCUGGGCGUGAGUGGAAUGAUUGGUGGAAUGCCGGGCUUCAUAUCGCCCUUCAUCGUGGGCCAACUUACUCACAAUAAUGUAAGUU------- ...((..(((((((..(((..((((((((.(((((.(((.....)))((((........))))...)))))...)).)))))))))..)))))))..)).------- ( -30.30) >DroVir_CAF1 92101 99 - 1 UACGCGGGCAUAGUGCUCGGCGUCAGUGGCAUGAUCGGCGGCAUGCCGGGCUUUAUAUCGCCCUUCAUCGUGGGCAUAUUAACCCAGGGCAAUGUAAGU-------- ...(((((((((..(((((((((..((.((.......)).)))))))))))....))).)))).....(.((((........)))).))).........-------- ( -37.40) >DroPse_CAF1 82433 107 - 1 UAUGCGGGCAUUGUUCUGGGUGUUAGUGGCAUGAUUGGAGGCAUGCCGGGUUUCAUCUCACCCCUGAUUGUGGGUCACCUGACCCAGGGUAAUGUAAGUUUCUUCCU ...((..((((((..(((((((((((.((((((........))))))((((........)))))))))...((....))..))))))..))))))..))........ ( -39.00) >DroWil_CAF1 125144 100 - 1 UAUGCCGGCAUAGUGUUGGGAGUAAGUGGGGCCAUUGGCGGCAUGCCGGGCUUUAUCUCACCCUUCAUUGUGGGUCUACUGACGCAAGGAAAUGUAUGUU------- ..(((...(((((((..(((.(...((((((((...(((.....))).))))))))..).)))..))))))).(((....))))))..............------- ( -31.50) >DroAna_CAF1 77474 100 - 1 UAUGCUGGCAUUGUUCUGGGUGUGAGUGGCAUGAUUGGCGGUAUGCCUGGUUUCAUUUCGCCCUGGAUUGUGGGCCAGCUUACUAAUGACAAUGUGAGUU------- ...(((.((((((((......((((((((((((........))))))............((((........))))..))))))....)))))))).))).------- ( -32.80) >DroPer_CAF1 82996 107 - 1 UAUGCGGGCAUUGUUCUGGGUGUUAGUGGCAUGAUUGGAGGCAUGCCGGGUUUCAUCUCACCCCUGAUUGUGGGUCACCUGACCCAGGGUAAUGUAAGUUUCUUCCU ...((..((((((..(((((((((((.((((((........))))))((((........)))))))))...((....))..))))))..))))))..))........ ( -39.00) >consensus UAUGCGGGCAUUGUUCUGGGUGUGAGUGGCAUGAUUGGCGGCAUGCCGGGCUUCAUCUCACCCUUCAUUGUGGGCCAACUGACCCAGGGUAAUGUAAGUU_______ ...((..(((((((.((((..((((((((((((........))))))............((((........))))..)))))))))).)))))))..))........ (-22.99 = -23.93 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:00 2006