Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,017,699 – 2,017,867 |
Length | 168 |
Max. P | 0.987504 |
Location | 2,017,699 – 2,017,800 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 86.13 |
Mean single sequence MFE | -28.57 |
Consensus MFE | -19.08 |
Energy contribution | -19.57 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.67 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2017699 101 + 20766785 AUCUCGUUUAAGUGACUCCGAAACGGCAGCACUGCAACAGC------------AACAGCAUCAGCAAUUGCAGUUGCAAUGACAGCGGCAACAUCGCGCGAUGACAUCGAAAG .((((((...((((.(((((...))).))))))(((((.((------------((..((....))..)))).))))).......((((.....)))))))).))......... ( -27.20) >DroSec_CAF1 2733 107 + 1 AUCUCGUUUAAGUGACUCCGAAACGGCAGCACUGCAACAGCAACUGCAA------CAGCAUCAGCAAUUGCAGUUGCAAUGACAGCGGCAACAUCGCGCGAUGACAUCGAAAG ...(((((..((((.(((((...))).))))))((....((((((((((------..((....))..)))))))))).......((((.....)))))))))))......... ( -33.90) >DroSim_CAF1 2800 113 + 1 AUCUCGUUUAAGUGACUCCGAAACGGCAGCACUGCAACAGCAACUGCAACAGCAACAGCAUCAGCAAUUGCAGUUGCAAUGACAGCGGCAACAUCGCGCGAUGACAUAGAAAG ...(((((..((((.(((((...))).))))))((....((((((((((..((..........))..)))))))))).......((((.....)))))))))))......... ( -33.00) >DroEre_CAF1 2765 89 + 1 AUCUCGUUUAAGUGACUCCGAAGCGGCAGCA------------------------CAGCACCAGCAAUUGCAGUUGCAAUGACAGCGGCAACAUCGCGCGAUGACAUCGAAAG .((((((....(((.(((((...))).))))------------------------).((....((.(((((....)))))....))(....)...)))))).))......... ( -20.20) >consensus AUCUCGUUUAAGUGACUCCGAAACGGCAGCACUGCAACAGC______________CAGCAUCAGCAAUUGCAGUUGCAAUGACAGCGGCAACAUCGCGCGAUGACAUCGAAAG .((((((...((((.(((((...))).))))))........................((....((.(((((....)))))....))(....)...)))))).))......... (-19.08 = -19.57 + 0.50)
Location | 2,017,738 – 2,017,838 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 89.08 |
Mean single sequence MFE | -31.62 |
Consensus MFE | -26.71 |
Energy contribution | -26.53 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -2.80 |
Structure conservation index | 0.84 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987504 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2017738 100 + 20766785 GC------------AACAGCAUCAGCAAUUGCAGUUGCAAUGACAGCGGCAACAUCGCGCGAUGACAUCGAAAGUGUAAUAUAAUAAGUUGCAAUUGCCAGUGUGUGUAUCU ((------------(...((((..((((((((((((((.......)))))..((((....))))(((.(....))))............)))))))))..)))).))).... ( -30.70) >DroSec_CAF1 2772 106 + 1 GCAACUGCAA------CAGCAUCAGCAAUUGCAGUUGCAAUGACAGCGGCAACAUCGCGCGAUGACAUCGAAAGUGUAAUAUAAUAAGUUGCAAUUGCCAGUGUGUGUAUCA ((((((((((------..((....))..))))))))))....(((..(((((((((....))))..........((((((.......)))))).)))))..)))........ ( -33.60) >DroSim_CAF1 2839 112 + 1 GCAACUGCAACAGCAACAGCAUCAGCAAUUGCAGUUGCAAUGACAGCGGCAACAUCGCGCGAUGACAUAGAAAGUGUAAUAUAAUAAGUUGCAAUUGCCAGUGUGUGUAUCA ((((((((((..((..........))..))))))))))....(((..(((((((((....))))..........((((((.......)))))).)))))..)))........ ( -32.70) >DroEre_CAF1 2796 96 + 1 ----------------CAGCACCAGCAAUUGCAGUUGCAAUGACAGCGGCAACAUCGCGCGAUGACAUCGAAAGUGUAAUAUAAUAAGUUGCAAUUGCCAGUGUUUGUAUCU ----------------.(((((..((((((((((((((.......)))))..((((....))))(((.(....))))............)))))))))..)))))....... ( -29.50) >consensus GC______________CAGCAUCAGCAAUUGCAGUUGCAAUGACAGCGGCAACAUCGCGCGAUGACAUCGAAAGUGUAAUAUAAUAAGUUGCAAUUGCCAGUGUGUGUAUCA ..................((((..((((((((((((((.......)))))..((((....))))((((.....))))............)))))))))..))))........ (-26.71 = -26.53 + -0.19)
Location | 2,017,738 – 2,017,838 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 89.08 |
Mean single sequence MFE | -28.55 |
Consensus MFE | -21.42 |
Energy contribution | -21.68 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.03 |
Structure conservation index | 0.75 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810500 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2017738 100 - 20766785 AGAUACACACACUGGCAAUUGCAACUUAUUAUAUUACACUUUCGAUGUCAUCGCGCGAUGUUGCCGCUGUCAUUGCAACUGCAAUUGCUGAUGCUGUU------------GC ......(((((..((((((((((...((......))......(((((.((.((.(((....))))).)).)))))....))))))))))..)).))).------------.. ( -24.30) >DroSec_CAF1 2772 106 - 1 UGAUACACACACUGGCAAUUGCAACUUAUUAUAUUACACUUUCGAUGUCAUCGCGCGAUGUUGCCGCUGUCAUUGCAACUGCAAUUGCUGAUGCUG------UUGCAGUUGC ........(((.((((((............(((((........)))))((((....)))))))))).)))....(((((((((((.((....)).)------)))))))))) ( -30.60) >DroSim_CAF1 2839 112 - 1 UGAUACACACACUGGCAAUUGCAACUUAUUAUAUUACACUUUCUAUGUCAUCGCGCGAUGUUGCCGCUGUCAUUGCAACUGCAAUUGCUGAUGCUGUUGCUGUUGCAGUUGC ..............(((((((((((...................(((.((.((.(((....))))).)).))).(((((.(((........))).))))).))))))))))) ( -31.40) >DroEre_CAF1 2796 96 - 1 AGAUACAAACACUGGCAAUUGCAACUUAUUAUAUUACACUUUCGAUGUCAUCGCGCGAUGUUGCCGCUGUCAUUGCAACUGCAAUUGCUGGUGCUG---------------- .........(((..(((((((((...((......))......(((((.((.((.(((....))))).)).)))))....)))))))))..)))...---------------- ( -27.90) >consensus AGAUACACACACUGGCAAUUGCAACUUAUUAUAUUACACUUUCGAUGUCAUCGCGCGAUGUUGCCGCUGUCAUUGCAACUGCAAUUGCUGAUGCUG______________GC .........((..((((((((((...((......))......(((((.((.((.(((....))))).)).)))))....))))))))))..))................... (-21.42 = -21.68 + 0.25)
Location | 2,017,760 – 2,017,867 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 95.48 |
Mean single sequence MFE | -35.38 |
Consensus MFE | -33.33 |
Energy contribution | -33.20 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.06 |
Mean z-score | -1.93 |
Structure conservation index | 0.94 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.912810 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2017760 107 + 20766785 UUGCAAUGACAGCGGCAACAUCGCGCGAUGACAUCGAAAGUGUAAUAUAAUAAGUUGCAAUUGCCAGUGUGUGUAUCUCCGUUUGUUGCCGCGGGUCGUGCACUCAG .((((.((((.(((((((((.((.(.(((((((((....)((((((.......)))))).........)))).)))).)))..)))))))))..))))))))..... ( -36.90) >DroSec_CAF1 2800 107 + 1 UUGCAAUGACAGCGGCAACAUCGCGCGAUGACAUCGAAAGUGUAAUAUAAUAAGUUGCAAUUGCCAGUGUGUGUAUCACCGUUGGUUGCCGCGGGUCGUGCACUCAG .((((.((((.((((((((..((.(.(((((((((....)((((((.......)))))).........)))).)))).)))...))))))))..))))))))..... ( -36.70) >DroSim_CAF1 2873 107 + 1 UUGCAAUGACAGCGGCAACAUCGCGCGAUGACAUAGAAAGUGUAAUAUAAUAAGUUGCAAUUGCCAGUGUGUGUAUCACCGUUGGUUGCCGCGGGUCGUGCACUCAG .((((.((((.((((((((..((.(.((((((((((....((((((.......))))))....)...))))).)))).)))...))))))))..))))))))..... ( -37.20) >DroEre_CAF1 2814 107 + 1 UUGCAAUGACAGCGGCAACAUCGCGCGAUGACAUCGAAAGUGUAAUAUAAUAAGUUGCAAUUGCCAGUGUUUGUAUCUCCUUUUGUUGCCGUGGGUCGUGUACUUGG .((((.((((.(((((((((((....))))....((((((.(..((((((......((....))......))))))..))))))))))))))..))))))))..... ( -30.70) >consensus UUGCAAUGACAGCGGCAACAUCGCGCGAUGACAUCGAAAGUGUAAUAUAAUAAGUUGCAAUUGCCAGUGUGUGUAUCACCGUUGGUUGCCGCGGGUCGUGCACUCAG .((((.((((.((((((((..((.(.((((((((.(.((.((((((.......)))))).))..).))))...)))).)))...))))))))..))))))))..... (-33.33 = -33.20 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:56 2006