Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,217,523 – 1,217,619 |
Length | 96 |
Max. P | 0.974551 |
Location | 1,217,523 – 1,217,619 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 91.69 |
Mean single sequence MFE | -16.65 |
Consensus MFE | -15.18 |
Energy contribution | -14.77 |
Covariance contribution | -0.41 |
Combinations/Pair | 1.18 |
Mean z-score | -1.84 |
Structure conservation index | 0.91 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974551 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1217523 96 - 20766785 GAGAACAAAAUCAUAUAUUAGGCGUUGUCACUUUGACAUUUCGCCUGCUCUUUUACAUGGCAAUAAUCAUAAUUCAUUUUUCUCGCCUUCUCUGCC-------- (((((.............((((((.((((.....))))...))))))...........(((.......................))))))))....-------- ( -19.80) >DroVir_CAF1 16443 104 - 1 GAAAACAUAAUCAUAUAUUAGGCGUUGUCACUUUGACAUUUCGCCUGCUCUUUUACAUGGCAAUAAUCAUAAUUCAUUUUUCUCUCGCUCUCUCGCUGCUGCGU (((((..............(((((.((((.....))))...)))))((.(........)))................)))))...........(((....))). ( -18.30) >DroPse_CAF1 9474 96 - 1 GAAAACAUAAUCAUAUAUUAGGCGUUGUCACUUUGACAUUUCGCCUGCUCUUUUACAUGGCAAUAAUCAUAAUUCAUUUUUCUCUCGCUCCCCAGC-------- (((((..............(((((.((((.....))))...)))))((.(........)))................)))))....(((....)))-------- ( -15.70) >DroWil_CAF1 9933 96 - 1 GAAAACAUAAUCAUAUAUUAGGCGUUGUCACUUUGACAUUUUGCCUGCUCUUUUACAUGGCAAUAAUCAUAAUUCAUUUUUCUCUUGCUCUCUCGC-------- (((((..............(((((.((((.....))))...)))))((.(........)))................)))))..............-------- ( -13.70) >DroAna_CAF1 9764 96 - 1 GAAAACAUAAUCAUAUAUUAGGCGUUGUCACUUUGACAUUUCGCCUGCUCUUUUACAUGGUAAUAAUCAUAAUUCAUUUUUCUCGCGCCCUCUCCC-------- (((((.............((((((.((((.....))))...)))))).........(((((....))))).......)))))..............-------- ( -16.70) >DroPer_CAF1 9490 96 - 1 GAAAACAUAAUCAUAUAUUAGGCGUUGUCACUUUGACAUUUCGCCUGCUCUUUUACAUGGCAAUAAUCAUAAUUCAUUUUUCUCUCGCUCCCCAGC-------- (((((..............(((((.((((.....))))...)))))((.(........)))................)))))....(((....)))-------- ( -15.70) >consensus GAAAACAUAAUCAUAUAUUAGGCGUUGUCACUUUGACAUUUCGCCUGCUCUUUUACAUGGCAAUAAUCAUAAUUCAUUUUUCUCUCGCUCUCUCGC________ (((((..............(((((.((((.....))))...)))))((.(........)))................)))))...................... (-15.18 = -14.77 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:55 2006