Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,341,121 – 10,341,219 |
Length | 98 |
Max. P | 0.995031 |
Location | 10,341,121 – 10,341,219 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 92.68 |
Mean single sequence MFE | -24.86 |
Consensus MFE | -22.34 |
Energy contribution | -22.34 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.93 |
Structure conservation index | 0.90 |
SVM decision value | 2.53 |
SVM RNA-class probability | 0.995031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10341121 98 + 20766785 -----CCACCACGAACUCCA-UCCAGAUUACCUGGUAGCCACACAGGAAUGCAACCGAAUCGAAAACAGAAUCGA-----AGCGCAGCCGGUGGCGUUAAUUAAAUACA -----........(((....-.((((.....))))..(((((...((..(((...(((.((.......)).))).-----.)))...)).))))))))........... ( -22.80) >DroSec_CAF1 60204 98 + 1 -----CCACCACGAACUCCA-UCCAGAUUACCUGGAAGCCACACAGGAAUGCAACCGAAUCGAAAACAGAAUCGA-----AGCGCAGCCGGUGGCGUUAAUUAAAUACA -----........(((....-(((((.....))))).(((((...((..(((...(((.((.......)).))).-----.)))...)).))))))))........... ( -25.10) >DroSim_CAF1 55850 98 + 1 -----CCACCACGAACUCCA-UCCAGAUUACCUGGAAGCCACACAGGAAUGCAACCGAAUCGAAAACAGAAUCGA-----AGCGCAGCCGGUGGCGUUAAUUAAAUACA -----........(((....-(((((.....))))).(((((...((..(((...(((.((.......)).))).-----.)))...)).))))))))........... ( -25.10) >DroEre_CAF1 56095 103 + 1 -----CCACCUCGAACUCCA-ACCAGAUUACCUGGAAGCCACACAGGAAUGCAGCUGAAUCGAAAGCAGAAUCGAAGCGAAGCGCAGCCGGUGGCGUUAAUUAAAUACA -----........(((....-.((((.....))))..(((((...((..(((.(((...((((........)))).....)))))).)).))))))))........... ( -26.70) >DroYak_CAF1 56778 104 + 1 ACCAGCCACCUCGAACUCCAAACCAGAUUACCUGGAAGCCACACAGGAAUGCAACGGAAUCGAAAACAGAAUCGA-----AGCGCAGCCGGUGGCGUUAAUUAAAUACA ....((((((......(((...((((.....))))...((.....))........))).((((........))))-----.........)))))).............. ( -24.60) >consensus _____CCACCACGAACUCCA_UCCAGAUUACCUGGAAGCCACACAGGAAUGCAACCGAAUCGAAAACAGAAUCGA_____AGCGCAGCCGGUGGCGUUAAUUAAAUACA .............(((......((((.....))))..(((((...((..(((.......((((........))))......)))...)).))))))))........... (-22.34 = -22.34 + -0.00)
Location | 10,341,121 – 10,341,219 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 92.68 |
Mean single sequence MFE | -31.46 |
Consensus MFE | -27.18 |
Energy contribution | -27.50 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.08 |
Mean z-score | -1.48 |
Structure conservation index | 0.86 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.862656 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10341121 98 - 20766785 UGUAUUUAAUUAACGCCACCGGCUGCGCU-----UCGAUUCUGUUUUCGAUUCGGUUGCAUUCCUGUGUGGCUACCAGGUAAUCUGGA-UGGAGUUCGUGGUGG----- .............((((((..(((.((..-----((((........))))..)(((..(((....)))..))).((((.....)))).-.).)))..)))))).----- ( -31.50) >DroSec_CAF1 60204 98 - 1 UGUAUUUAAUUAACGCCACCGGCUGCGCU-----UCGAUUCUGUUUUCGAUUCGGUUGCAUUCCUGUGUGGCUUCCAGGUAAUCUGGA-UGGAGUUCGUGGUGG----- .............((((((..(((.((..-----((((........))))..)(((..(((....)))..)))(((((.....)))))-.).)))..)))))).----- ( -32.00) >DroSim_CAF1 55850 98 - 1 UGUAUUUAAUUAACGCCACCGGCUGCGCU-----UCGAUUCUGUUUUCGAUUCGGUUGCAUUCCUGUGUGGCUUCCAGGUAAUCUGGA-UGGAGUUCGUGGUGG----- .............((((((..(((.((..-----((((........))))..)(((..(((....)))..)))(((((.....)))))-.).)))..)))))).----- ( -32.00) >DroEre_CAF1 56095 103 - 1 UGUAUUUAAUUAACGCCACCGGCUGCGCUUCGCUUCGAUUCUGCUUUCGAUUCAGCUGCAUUCCUGUGUGGCUUCCAGGUAAUCUGGU-UGGAGUUCGAGGUGG----- ...............(((((...((.((((((..((((........))))..)(((..(((....)))..))).((((.....)))).-.))))).)).)))))----- ( -29.40) >DroYak_CAF1 56778 104 - 1 UGUAUUUAAUUAACGCCACCGGCUGCGCU-----UCGAUUCUGUUUUCGAUUCCGUUGCAUUCCUGUGUGGCUUCCAGGUAAUCUGGUUUGGAGUUCGAGGUGGCUGGU .................((((((..((((-----((((...........(((((((..(((....)))..))..((((.....))))...))))))))))))))))))) ( -32.40) >consensus UGUAUUUAAUUAACGCCACCGGCUGCGCU_____UCGAUUCUGUUUUCGAUUCGGUUGCAUUCCUGUGUGGCUUCCAGGUAAUCUGGA_UGGAGUUCGUGGUGG_____ .............((((((..(((.(........((((........))))...(((..(((....)))..))).((((.....))))...).)))..))))))...... (-27.18 = -27.50 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:55 2006