Locus 2998

Sequence ID	2R_DroMel_CAF1
Location	10,336,951 – 10,337,043
Length	92
Max. P	0.886748

overview

Window 0

Location	10,336,951 – 10,337,043
Length	92
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	97.61
Mean single sequence MFE	-29.78
Consensus MFE	-25.94
Energy contribution	-26.94
Covariance contribution	1.00
Combinations/Pair	1.00
Mean z-score	-1.70
Structure conservation index	0.87
SVM decision value	0.94
SVM RNA-class probability	0.886748
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10336951 92 + 20766785
UCCUGCUUCGAAAAGUGGUUUUUAAUGUCUGCACCGGCAGUUCGAUGAUGAGUCUGACAUUUAAGACCCUUUGGCAGCAGCUGGUCCUUGAC
..(((((.(..((((.((((((.(((((((((....)))....(((.....))).)))))).)))))))))).).)))))............ ( -25.10)
>DroSec_CAF1 56052 92 + 1
UCCUGCUUCGAAAAGUGGUUUUUAAUGUCUGCACCGGCAGUUCGAUGAUGAGGCUGACAUUUAAGACCCUUUGGCAGCAGCUGGUCCUUGAC
..(((((.(..((((.((((((.((((((.((..((.((......)).))..)).)))))).)))))))))).).)))))............ ( -28.40)
>DroSim_CAF1 51785 92 + 1
UCCGGCUUCGAAAAGUGGUUUUUAAUGUCUGCACCGGCAGUUCGAUGAUGAGGCUGACAUUUAAGACCCUUUGGCAGCAGCUGGUCCUUGAC
.((((((.(..((((.((((((.((((((.((..((.((......)).))..)).)))))).))))))))))....).))))))........ ( -31.10)
>DroEre_CAF1 51936 92 + 1
UCCGGCUGCGAAAAGUGGUUUUUAAUGUCUGCACCGGCAGUUCGAUGAUGAGGCUGACAUUUAAGACCCUUUGGCAGCAGCUGCUCCUUGAC
..(((((((..((((.((((((.((((((.((..((.((......)).))..)).)))))).))))))))))....)))))))......... ( -34.40)
>DroYak_CAF1 52658 92 + 1
UCCGGCUUCGAAAAGUGGUUUUUAAUGUCUGCACCGGCAGUUCGAUGAUGAGGCUGACAUUUAAGACCCUUUGGCAUCAGCUGGUCCUUGAC
.((((((....((((.((((((.((((((.((..((.((......)).))..)).)))))).))))))))))......))))))........ ( -29.90)
>consensus
UCCGGCUUCGAAAAGUGGUUUUUAAUGUCUGCACCGGCAGUUCGAUGAUGAGGCUGACAUUUAAGACCCUUUGGCAGCAGCUGGUCCUUGAC
.((((((.(..((((.((((((.((((((.((..((.((......)).))..)).)))))).))))))))))....).))))))........ (-25.94 = -26.94 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:53 2006