Locus 2997

Sequence ID 2R_DroMel_CAF1
Location 10,333,685 – 10,333,804
Length 119
Max. P 0.854135
window4949

overview

Window 9

Location 10,333,685 – 10,333,804
Length 119
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 81.66
Mean single sequence MFE -34.33
Consensus MFE -25.19
Energy contribution -25.22
Covariance contribution 0.03
Combinations/Pair 1.20
Mean z-score -2.16
Structure conservation index 0.73
SVM decision value 0.80
SVM RNA-class probability 0.854135
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10333685 119 + 20766785
CCAAGCGAUCCACAUCCGGAUCAUUGGCCAGAACCAAGGUGCAGUGUUCCGCAUCCGCCUUCUUUAUGGCCAGCUUCAGCGCUUCCUUGCCCUCUAACGAAAGUUUAAAAUCAUGUACA
..(((((((((......)))))..((((((.....((((((..(((.....))).)))))).....)))))))))).((.((......)).))..(((....))).............. ( -34.10)
>DroSec_CAF1 52825 119 + 1
CCAAGCGAUCCACAUCUGGAUCAUUGGCCAGAACCAAGGUGCAGUGUUCCGCAUCCGCCUUCUUUAUGGCCAGCUUCAGCGCUUCCUUGCCCUCUAACGAAAAUUUAAAAUCAUGUAAC
..((((((((((....))))))..((((((.....((((((..(((.....))).)))))).....))))))))))..((((......))..((....))..............))... ( -32.50)
>DroSim_CAF1 48521 119 + 1
CCAAACGAUCCACAUCCGGAUCAUUGGCCAGAACCAAGGUGCAGUGUUCCGCAUCCGCCUUCUUUAUAGCCAGCUUCAGCGCUUCCUUGCCCUCUAACGAAAGUUUAAAAUCAUGUACA
......(((((......)))))..((((...((..((((((..(((.....))).))))))..))...))))((....))((......)).....(((....))).............. ( -25.70)
>DroEre_CAF1 48576 114 + 1
CCAGGCGAUCCACAUCCGGAUCGUUGGCCAGAAUCAAGGUGCAGUGCUCCGCGUCCGCCUUCUUUAUGGCCAGCUUCAGGGCUUCCCUGCCCUCUAAUGAGAGUUUAAAAUCAA-----
...((((((((......)))))((((((((.((..((((((..(((...)))...))))))..)).))))))))...((((...)))))))((((....))))...........----- ( -41.20)
>DroYak_CAF1 49188 119 + 1
CCAGGCGAUCCACAUCCGGAUCAUUGGCCAGCACCAAGGUGCAGUGCUCCGCUUCCGCCUUCUUUAUGGCCAGCUUCAGCGCUUCCCUGCCCUCUAAGUAAGGACUCAAAUUAAAUCCU
((..(((((((......)))))...(((..((((....))))((((((..(((...(((........))).)))...)))))).....)))......))..))................ ( -34.70)
>DroAna_CAF1 53290 114 + 1
CCAGACGAUCUCCAUCUGGAUCGUUGGCCAGGAUAAUGGUGCAGUGCUCCGCCUCGGCCUUCACAAUGGCUAAUCGGAGGGCCUCCUUGCCAUCUGAAAA---ACAGAAACCAC--AAA
...((((((((......))))))))(((.((((....((((........))))..(((((((.(.((.....)).)))))))))))).))).((((....---.))))......--... ( -37.80)
>consensus
CCAAGCGAUCCACAUCCGGAUCAUUGGCCAGAACCAAGGUGCAGUGCUCCGCAUCCGCCUUCUUUAUGGCCAGCUUCAGCGCUUCCUUGCCCUCUAACGAAAGUUUAAAAUCAUGUACA
..(((((((((......))))).(((((((.....((((((..(((...)))...)))))).....))))))).......))))................................... (-25.19 = -25.22 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:52 2006