Locus 2996

Sequence ID	2R_DroMel_CAF1
Location	10,330,178 – 10,330,271
Length	93
Max. P	0.836662

overview

Window 8

Location	10,330,178 – 10,330,271
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	93.01
Mean single sequence MFE	-18.82
Consensus MFE	-15.68
Energy contribution	-16.28
Covariance contribution	0.60
Combinations/Pair	1.00
Mean z-score	-1.57
Structure conservation index	0.83
SVM decision value	0.73
SVM RNA-class probability	0.836662
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10330178 93 - 20766785
AAUCAAUAAUUCAUCAGUUUCGUGGCAGCUGCACGAAUUGUCGUCCUUCGUCCUGCCGCUCACCCCCUCUCGGCGCAUCUCUGCCCAACAAUU
................(((..(((((((....(((((.........))))).)))))))............((.(((....)))))))).... ( -19.40)
>DroSec_CAF1 49449 93 - 1
AAUCAAUAAUUCAUCAGUAUAGUGGCAGCUGCAAGGAUCGUCGUCCUUCGUCCUGCCGCUCACCCCCUCUCAACGCAUCUCUUUCCAACAAUU
....................((((((((..((((((((....)))))).)).))))))))................................. ( -19.10)
>DroSim_CAF1 45077 93 - 1
AAUCAAUAAUUCAUCAGUUUCGUGGCAGCUGCAAGGAUCGUCGUCCUUCGUCCUGCCGCUCACCCCCUCUCGGCGCAUCUCUUUCCAACAAUU
................(((..(((((((..((((((((....)))))).)).)))))))......((....)).............))).... ( -18.80)
>DroEre_CAF1 45117 93 - 1
AAUCAAUAAUUCAUCAGUUUCGUGGCAGCUGCAAGGAUCGUCGUCCCUCGUCCUGCCGCUCACCCCCUCUCGCCGCAUCUCUUUCUAACAAUU
.....................((((((((.(((.(((.((........)))))))).)))...........)))))................. ( -18.40)
>DroYak_CAF1 45734 92 - 1
AAUCAAUAAUUCAUCAGUUUUGUGGCAGCUGCAAGGAUCGUCGUCCUUAGUCCUGCCGCUCACCCCC-CUCGCCGCAUCUCGUUCUAACAAUU
.....................(((((((..((((((((....)))))).)).)))))))........-......................... ( -18.40)
>consensus
AAUCAAUAAUUCAUCAGUUUCGUGGCAGCUGCAAGGAUCGUCGUCCUUCGUCCUGCCGCUCACCCCCUCUCGCCGCAUCUCUUUCCAACAAUU
.....................(((((((..((((((((....)))))).)).))))))).................................. (-15.68 = -16.28 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:51 2006