Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,325,027 – 10,325,118 |
Length | 91 |
Max. P | 0.500000 |
Location | 10,325,027 – 10,325,118 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 80.02 |
Mean single sequence MFE | -20.58 |
Consensus MFE | -11.60 |
Energy contribution | -11.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.11 |
Mean z-score | -1.77 |
Structure conservation index | 0.56 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10325027 91 + 20766785 UAAAA--GUUCCAUCCUGUAACCUGCAUCUGCA------UCCUAUAUCCUUCAUCCUCUUUCACUU------------CGCAGCAAAAAGUGAUGGAUGUUUCGAAUGAAC .....--((((.....((((...(((....)))------...))))((...(((((....((((((------------.........)))))).)))))....))..)))) ( -14.90) >DroSec_CAF1 39418 103 + 1 UAAAA--GUUCCAUCCUGUAACCUGCAUCUGCA------UCCAACAUCCUUCAUCCUCUUUCACUUCAAGCUCUAUCUCGCAGCAAAAUGUGAUGGAUGUUUCGAGUGAAC .....--.........(((....(((....)))------....))).............(((((((.((((((((((..(((......))))))))).)))).))))))). ( -20.30) >DroSim_CAF1 39618 103 + 1 UAAAA--GUUCCGUCCUGUAACCUGCAUCUGCA------UCCAACAUCCUUCAUCCUCUUUCACUUCAAGCUCUAUCUCGCAGCAAAAAGUGAUGGAUGUUUUGAGAGAAC .....--((((..((.(((....(((....)))------....))).....(((((....((((((...((((......).)))...)))))).)))))....))..)))) ( -19.70) >DroEre_CAF1 39589 90 + 1 UCAAA--GUUCCAUCCUGUAACCUGCAUCUGCA------UCCCAUAUCCUUCAUCCUCUUUCACUUCAAGCU-------------AAAAGUGAUGGAUGAUUCCAGGGGGC .....--...((.(((((.....(((....)))------...........((((((....((((((......-------------..)))))).))))))...))))))). ( -22.60) >DroYak_CAF1 40571 111 + 1 AUGAAUCCUUCUACCCUGUAACCUGCAUCUGCAUCUCCAUCCUAUAUCCUUCAUCCUCUUUCACUUCAAGCUUAGUCUCGCAGCAAAAAGUGAUGGAUGAUUCGAGGGAGC .....((((((............(((....))).................((((((....((((((...(((.........)))...)))))).))))))...)))))).. ( -25.40) >consensus UAAAA__GUUCCAUCCUGUAACCUGCAUCUGCA______UCCAAUAUCCUUCAUCCUCUUUCACUUCAAGCU___UCUCGCAGCAAAAAGUGAUGGAUGUUUCGAGGGAAC .......((((............(((....)))..................(((((....((((((.....................)))))).)))))........)))) (-11.60 = -11.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:47 2006