| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,314,200 – 10,314,295 |
| Length | 95 |
| Max. P | 0.556258 |
| Location | 10,314,200 – 10,314,295 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 81.57 |
| Mean single sequence MFE | -33.49 |
| Consensus MFE | -21.94 |
| Energy contribution | -22.38 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.556258 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10314200 95 + 20766785 CGACGUCCCCAAUCGAAGGGGGCGUGUGUCUAGGAUCUCGGUUUUGGGA-------UCUCGGGUCUCCAUUUCAG-CUUGGCUUUAUUCUCUAUUCCCAGGCA--------- ..((((((((.......))))))))...((..((((((((....)))))-------)))..))...........(-(((((...((.....))...)))))).--------- ( -32.40) >DroSec_CAF1 28656 95 + 1 CGACGUCCCCAAUCGCAGGGGGCGUGUGUCUAGGAUCUCGGUUUUGGGA-------UUUCGGUUCUGCAUUUCAG-CUUGGCUUUAUUCUCUAUUCCCAGGCA--------- ..((((((((.......))))))))((((((..(((((((....)))))-------))..))....))))....(-(((((...((.....))...)))))).--------- ( -30.10) >DroSim_CAF1 28938 95 + 1 CGACGUCCCCAAUCGCAGGGGGCGUGUGUCUAGGAUCUCGGUUUUGGGA-------UCUCGGGUCUCCAUUUCAG-CUUGGCUUUAUUCUCUAUUCCCAGGCA--------- ..((((((((.......))))))))...((..((((((((....)))))-------)))..))...........(-(((((...((.....))...)))))).--------- ( -32.40) >DroEre_CAF1 28713 96 + 1 CGACGUCCCCAAUCGAAGGGGGCGUGUGUCUAGGAUCUCGGUUUUGGGG-------CCUCGGGUCUCCAUUUCAGGCUUGGCUUUAUUCUCUAUUCCCAGGCA--------- ..((((((((.......)))))))).(((((.(((....((...(((((-------((...(((((.......))))).)))))))..))....))).)))))--------- ( -35.20) >DroYak_CAF1 29383 95 + 1 CGACGUCCCCAAUCGAAGGGGGCGUGUGUCUAGGAUCUCGGUUUUGGGA-------UCUCGGGUCUCCAUUUCAG-CUUUGCUUUAUUCUCUAUUCCCAGGCA--------- ..((((((((.......)))))))).(((((.((((((((....)))))-------))).(((..........((-(...)))............))))))))--------- ( -29.85) >DroAna_CAF1 31430 104 + 1 --ACGUCCCCAGUU---GGGGGCGUGUGUCUAGGAUCCCGUCCAUCCAAGUCCAAGUCUUGACUCCCCA---CAGUCUAGGCGCUCAAUUAAAUUCCCAGGCAGGCCUGGGG --((((((((....---))))))))(((((((((((.......)))).............((((.....---.)))))))))))...........((((((....)))))). ( -41.00) >consensus CGACGUCCCCAAUCGAAGGGGGCGUGUGUCUAGGAUCUCGGUUUUGGGA_______UCUCGGGUCUCCAUUUCAG_CUUGGCUUUAUUCUCUAUUCCCAGGCA_________ ..((((((((.......)))))))).(((((.(((..........((((.......))))((....))..........................))).)))))......... (-21.94 = -22.38 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:46 2006