Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,312,468 – 10,312,625 |
Length | 157 |
Max. P | 0.913113 |
Location | 10,312,468 – 10,312,585 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 91.97 |
Mean single sequence MFE | -32.00 |
Consensus MFE | -26.14 |
Energy contribution | -26.22 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.12 |
Mean z-score | -1.80 |
Structure conservation index | 0.82 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913113 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10312468 117 - 20766785 CUAAGAAAUAUCGCCUAUGAUAUGGCGCCCAACAUGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUGGGCUUAACGGGAAACCCCCUUAAUCUCUGCUAAUCUCUCCCUA .((((.......((((((....(((.((((......)))))))((((((.....))))))...........)))))).....((....))..))))..................... ( -31.20) >DroSec_CAF1 26884 117 - 1 GUAAGAAAUGUCGCUUAUAAUAUGGCGCCCAACAUGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUUGGCUUAACGGGAAACCCCCUUAAUCUCUGCUAAUCUCUCCCCA (..(((..(((..(........(((.((((......)))))))((((((.....))))))...)..))).(((((((((((.(((....))).)))).....))))))))))..).. ( -32.20) >DroSim_CAF1 27199 117 - 1 AUAAGAAAUGUCGUUUAUGAUGUGGCGCCCAACAUGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUGGGCUUAACGGGAAACCCCCUUAAUCUCUGCUAAUCUCUCCCCA ...(((.(((((......((((.(((.(((.....))))))))))((((.....))))))))).......((..((.((((.(((....))).)))).).)..))..)))....... ( -32.70) >DroEre_CAF1 26988 117 - 1 AUAAGAAAUGUCGCUUACUAUAUGGCGCCCAACGAGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUGGGCUUAACGGGAAACCCACUUAAUCUCUACUAAUCUCUCCCCU .((((.......(((((((...(((.((((......)))))))((((((.....))))))..........))))))).....((....))..))))..................... ( -31.60) >DroYak_CAF1 27680 116 - 1 AUAGGAAAUGUCGCUUAUGAUAUGGCGCCCAACGAGG-GCCCAUCAACAUUUACUGUUGACAUGUAACAAGGUGGGCUUAACGGGAAAGCCCCUUAAUCUCUACUAAUCUCUCCCCU ...(((..(((..(..(((...(((.((((.....))-)))))((((((.....))))))))))..))).((((((.((((.(((....))).)))).).)))))......)))... ( -32.30) >consensus AUAAGAAAUGUCGCUUAUGAUAUGGCGCCCAACAUGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUGGGCUUAACGGGAAACCCCCUUAAUCUCUGCUAAUCUCUCCCCA ...(((..(((..(........(((.((((......)))))))((((((.....))))))...)..))).((((((.((((.(((....))).)))).).)))))..)))....... (-26.14 = -26.22 + 0.08)
Location | 10,312,505 – 10,312,625 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.83 |
Mean single sequence MFE | -31.59 |
Consensus MFE | -24.60 |
Energy contribution | -25.00 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.16 |
Mean z-score | -1.94 |
Structure conservation index | 0.78 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.869651 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10312505 120 - 20766785 CUAGAUAAUACAGAUCAUAAAAUAAGCAGACACAAAACCUCUAAGAAAUAUCGCCUAUGAUAUGGCGCCCAACAUGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUGGGCUUA ...(((.......)))......((((((((.........)))........((((((.((...(((.((((......)))))))((((((.....)))))).......))))))))))))) ( -27.90) >DroSec_CAF1 26921 120 - 1 CUAGAUAGUAAAGAUCAUGAAAUAAGCAGCCACAAAGCCUGUAAGAAAUGUCGCUUAUAAUAUGGCGCCCAACAUGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUUGGCUUA ...(((.......)))...........(((((....((((.......(((((.........((((.((((......)))))))).((((.....)))))))))......))))))))).. ( -29.62) >DroSim_CAF1 27236 120 - 1 CUAGAUAAUAAAGAUCAAGCAAUAAGCAGCCACAAAGCCUAUAAGAAAUGUCGUUUAUGAUGUGGCGCCCAACAUGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUGGGCUUA ...(((.......)))..((.....)).......((((((((.....(((((......((((.(((.(((.....))))))))))((((.....)))))))))........)))))))). ( -34.42) >DroEre_CAF1 27025 120 - 1 CUAGACAAUUUAGAUCAUGAAAUAAGCAGCCACAAAGCCCAUAAGAAAUGUCGCUUACUAUAUGGCGCCCAACGAGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUGGGCUUA (((((...))))).....................((((((((......(((..(........(((.((((......)))))))((((((.....))))))...)..)))..)))))))). ( -31.80) >DroYak_CAF1 27717 119 - 1 CUAGAUAAAUUAGGCCAUGAAAUAAGCAGCCACUAAGCCCAUAGGAAAUGUCGCUUAUGAUAUGGCGCCCAACGAGG-GCCCAUCAACAUUUACUGUUGACAUGUAACAAGGUGGGCUUA ............(((.............)))..(((((((((......(((..(..(((...(((.((((.....))-)))))((((((.....))))))))))..)))..))))))))) ( -34.22) >consensus CUAGAUAAUAAAGAUCAUGAAAUAAGCAGCCACAAAGCCUAUAAGAAAUGUCGCUUAUGAUAUGGCGCCCAACAUGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUGGGCUUA ..................................((((((((.....(((((.........((((.((((......)))))))).((((.....)))))))))........)))))))). (-24.60 = -25.00 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:45 2006