| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,755,712 – 1,755,815 |
| Length | 103 |
| Max. P | 0.550956 |
| Location | 1,755,712 – 1,755,815 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 74.02 |
| Mean single sequence MFE | -29.46 |
| Consensus MFE | -16.14 |
| Energy contribution | -16.10 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550956 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1755712 103 + 20766785 ----ACGCGGUAC------------UCAGCGGACAGAAAUAAAGUUACUCUGUGAAUAGGCGAAUAGGACAGGACACCUGUUAUUGUCUGCUAAUCAAAGCACUUGACUAAGUACUGAU ----...((((((------------(.(((((((((.............((((..........))))((((((...)))))).)))))))))..((((.....))))...))))))).. ( -28.00) >DroSec_CAF1 25312 103 + 1 ----ACGCGGUAC------------UCAGCGGACGGAAAUAAAGUCAGUCUGUUUAUAGGUGAAUAGGACAGGACACCUGUUAUUGUCUGCUAAUCAAAGCACUUGACUAAGUACUGAU ----...((((((------------(.(((((((((.............(((((((....)))))))((((((...)))))).)))))))))..((((.....))))...))))))).. ( -30.50) >DroSim_CAF1 22870 103 + 1 ----ACGCGGUAC------------UCAGCGGACGGAAAUAAAGUCAGUCUGUUUAUAGGUGAAUAGGACAGGACACCUGUUAUUGUCUGCUAAUCAAAGCACUUGACUAAGUACUGAU ----...((((((------------(.(((((((((.............(((((((....)))))))((((((...)))))).)))))))))..((((.....))))...))))))).. ( -30.50) >DroEre_CAF1 23540 101 + 1 AUGUGCGCAGCAU------------GCAGCAGGCAGGCAUAAAGAUACUUUGGGCAUAGGUG------ACAGGACACCUGUUAUUGUCUGCCAAUCAAAGCACUUGACUAAAUACUGAU ..((((((.....------------))....(((((((.(((((...)))))......((((------(((((...)))))))))))))))).......))))................ ( -30.20) >DroAna_CAF1 19765 101 + 1 ----AC-CGAUAGUGGCUUCCGAGUCCUGCGGACGUGGAUA---UCA-------UGUGGGUGCGCCG---GGGACACCUGUUAUUGGCUGCUAAUCAAAGCACUUGACUUAAUACUGAU ----.(-((...((((..((((.((((...)))).))))..---)))-------).)))((((((((---(.(((....))).)))))((.....))..))))................ ( -28.10) >consensus ____ACGCGGUAC____________UCAGCGGACGGAAAUAAAGUCACUCUGUGUAUAGGUGAAUAGGACAGGACACCUGUUAUUGUCUGCUAAUCAAAGCACUUGACUAAGUACUGAU .......((((((...............((((((((...................(((((((............)))))))..))))))))...((((.....))))....)))))).. (-16.14 = -16.10 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:52 2006