Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,304,136 – 10,304,226 |
Length | 90 |
Max. P | 0.698759 |
Location | 10,304,136 – 10,304,226 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 86.39 |
Mean single sequence MFE | -26.27 |
Consensus MFE | -20.51 |
Energy contribution | -19.65 |
Covariance contribution | -0.86 |
Combinations/Pair | 1.27 |
Mean z-score | -2.41 |
Structure conservation index | 0.78 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698759 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10304136 90 - 20766785 CAGAGUACGA-GGUACAAACUAAUUGUUUGUUUCUGCAUCCCAUCGUAAGGAUGAUGGAUGAUUCCACGAUUCUAGCUUGU-GUCCUUUUUA .(((((.(((-((.((((((.....)))))).))).(((((.(((((....))))))))))......))))))).......-.......... ( -22.00) >DroSec_CAF1 18665 90 - 1 CGGAGUACGA-GGUACAAACUAAUUGUUUGUUUCUGCAUCCCACCGCAAGGAUGAUGGAUGAUUCCAGGAUUCUAGCUUGU-GUCUCUUUUU .(((((((((-(.(((((((.....))))).((((((((((((((....)).))..)))))....)))))...)).)))))-).)))).... ( -27.80) >DroSim_CAF1 18624 90 - 1 CGGAGUACGA-GGUACAAACUAAUUGUUUGUUUCUGCAUCCCACCGCAAGGAUGAUGGAUGAUUCCAGGAUUCUAGCUUGU-GUCCUCUUUA .(((((...(-((.((((((.....)))))).))).(((((((((....)).))..))))))))))(((((.(......).-)))))..... ( -28.30) >DroEre_CAF1 18734 85 - 1 CGGAGUACGG-GAUACAAACUAAUUGUUUGUUUCUGCAUCCCACCGCAAGGAUGAUGGAUGAU-----GAUUCCCGCUUGU-ACCCUCCUUA .((.((((((-((.((((((.....)))))).))).(((((((((....)).))..)))))..-----..........)))-))))...... ( -26.40) >DroYak_CAF1 19078 85 - 1 CGGAGUACGA-GGUACAAACUAAUUGUUUGUUUCUGCAUCCCACCGCAAGGAUGAUGGAUGAU-----GAUUCCUGCUUGU-AUCCUCUUUA .(((.(((((-(..((((((.....)))))).....(((((((((....)).))..)))))..-----........)))))-))))...... ( -25.00) >DroAna_CAF1 22282 86 - 1 CGGGGAAAAAGGAUACAAACUAAUUGUUUGUUUCUGCAUCCCGCCGCAAGGAUGAUGGAUGAU-----GAUUCCU-CUUGUUUUCCUCUUUC .((((((((.(((.((((((.....)))))).))).(((((..((....)).....)))))..-----.......-....)))))))).... ( -28.10) >consensus CGGAGUACGA_GGUACAAACUAAUUGUUUGUUUCUGCAUCCCACCGCAAGGAUGAUGGAUGAU_____GAUUCCAGCUUGU_GUCCUCUUUA .(((((.....((.((((((.....)))))).))..(((((((((....)).))..)))))........))))).................. (-20.51 = -19.65 + -0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:41 2006