Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,300,454 – 10,300,546 |
Length | 92 |
Max. P | 0.764494 |
Location | 10,300,454 – 10,300,546 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 78.58 |
Mean single sequence MFE | -19.63 |
Consensus MFE | -15.90 |
Energy contribution | -15.93 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.05 |
Mean z-score | -1.20 |
Structure conservation index | 0.81 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.764494 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10300454 92 - 20766785 GCGUAUCGUUGAUUUAUUGGCAUUAUUAUCAACUGCAAUAUAAAACACGAUGCGGCAGA---CAUGCAAAGAGCUCGCCAAAAGGGAGCGGC-CAG .((((((((.(.(((((..(((...........)))...))))).)))))))))(((..---..))).....((((.((....))))))...-... ( -26.10) >DroGri_CAF1 21726 78 - 1 GCGUAUCGUUGAUUUAUUGGCAUUAUUAUCAACUGCAAUAUAAAACAUGAUGCGGCAAC----AUGGCCAGGACCA----GGACC---------A- .((((((((.(.(((((..(((...........)))...))))).))))))))).....----.(((((.......----)).))---------)- ( -16.80) >DroSec_CAF1 14931 76 - 1 GCGUAUCGUUGAUUUAUUGGCAUUAUUAUCAACUGCAAUAUAAAACACGAUGCGGCAGACGACAUGCAAAGAGC--------------------AA (((((((((.(.(((((..(((...........)))...))))).)))))))).(((.......))).....))--------------------.. ( -17.80) >DroSim_CAF1 14908 76 - 1 GCGUAUCGUUGAUUUAUUGGCAUUAUUAUCAACUGCAAUAUAAAACACGAUGCGGCAGACGACAUGCAAAGAGC--------------------AG (((((((((.(.(((((..(((...........)))...))))).)))))))).(((.......))).....))--------------------.. ( -17.80) >DroYak_CAF1 15414 91 - 1 GCGUAUCGUUGAUUUAUUGGCAUUAUUAUCAACUGCAAUAUAAAACACGAUGCGGCAGA---CAUGCAAAGCGCUCGA--AAAGCACGGGGUGGUG .((((((((.(.(((((..(((...........)))...))))).)))))))))(((..---..)))....(((((..--........)))))... ( -21.70) >DroAna_CAF1 18870 77 - 1 GCGUAUCGUUGAUUUAUUGGCAUUAUUAUCAACUGCAAUAUAAAACACGAUGCGGCAGA---CAUGCAAAGGGGGCU----------------CUU .((((((((.(.(((((..(((...........)))...))))).)))))))))(((..---..)))..........----------------... ( -17.60) >consensus GCGUAUCGUUGAUUUAUUGGCAUUAUUAUCAACUGCAAUAUAAAACACGAUGCGGCAGA___CAUGCAAAGAGC_C__________________AG .((((((((.(.(((((..(((...........)))...))))).)))))))))(((.......)))............................. (-15.90 = -15.93 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:40 2006