Locus 2987

Sequence ID 2R_DroMel_CAF1
Location 10,291,465 – 10,291,568
Length 103
Max. P 0.977518
window4935

overview

Window 5

Location 10,291,465 – 10,291,568
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 94.24
Mean single sequence MFE -24.14
Consensus MFE -20.60
Energy contribution -20.48
Covariance contribution -0.12
Combinations/Pair 1.08
Mean z-score -1.91
Structure conservation index 0.85
SVM decision value 1.79
SVM RNA-class probability 0.977518
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10291465 103 - 20766785
AACAUCGUAAAGACUCUUAAUUGAAGCUGGCAUAAAUCCACAACUGAUUGAUAAUUGCCAGCACAAUGGGAAAAACGAGUCCAAUGCCAUUUAUGGUCCAUCC
...(((((((((((((...((((..(((((((..((((.......))))......))))))).)))).(......))))))........))))))))...... ( -22.30)
>DroSec_CAF1 6024 102 - 1
AACAUCGUAAAGACUCUUAAUUGAAGCUGGCAUAAAUCCACAACUGAUUGAUAAUUGCCAGCACAAUGGGAAAAACGAGUCCGAUGCCAUUUAUGGUCCAGC-
..(((((....(((((...((((..(((((((..((((.......))))......))))))).)))).(......)))))))))))(((....)))......- ( -25.00)
>DroSim_CAF1 6009 102 - 1
AACAUCGUAAAGACUCUUAAUUGAAGCUGGCAUAAAUCCACAACUGAUUGAUAAUUGCCAGCACAAUGGGAAAAACGAGUCCGAUGCCAUUUAUGGUCCAGC-
..(((((....(((((...((((..(((((((..((((.......))))......))))))).)))).(......)))))))))))(((....)))......- ( -25.00)
>DroEre_CAF1 6075 101 - 1
AACAUCGUAAAGACUCUUAAUUGAAGCUGGCAUAAAUCCACAACUGAUUGAUAAUUGCCAGCAGAAUGGGA-AAACGAGCCCUAUACCGUUUAUGGUCCUAC-
...((((((((..............(((((((..((((.......))))......))))))).....(((.-.......))).......)))))))).....- ( -21.80)
>DroYak_CAF1 6229 102 - 1
AACAUCGUAAAGACUCUUAAUUGAAGCUGGCAUAAAUCCACAACUGAUUGAUAAUUGCCAGCACAAUGGGAGAAACGGGUUCGAUACCAUUUAUGGUCCCAC-
...((((((((..((((((.(((..(((((((..((((.......))))......))))))).))))))))).....(((.....))).)))))))).....- ( -26.60)
>consensus
AACAUCGUAAAGACUCUUAAUUGAAGCUGGCAUAAAUCCACAACUGAUUGAUAAUUGCCAGCACAAUGGGAAAAACGAGUCCGAUGCCAUUUAUGGUCCAAC_
...(((((((((((((.........(((((((..((((.......))))......)))))))......(......))))))........))))))))...... (-20.60 = -20.48 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:39 2006