| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,290,590 – 10,290,691 |
| Length | 101 |
| Max. P | 0.666432 |
| Location | 10,290,590 – 10,290,691 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 83.12 |
| Mean single sequence MFE | -45.83 |
| Consensus MFE | -36.30 |
| Energy contribution | -36.58 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.666432 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10290590 101 + 20766785 CUAUGAUCACGGUGGCGCCACCGGUUGUCCAGCCUUCGCUGGGCGAGAUCGCCUUGAUGCAGGGCGUGGCCACUGGCAGCGGUGGGUAGAGACCUGGAAAG---------- ((((((((.(((((....))))).(((((((((....)))))))))))))((((((...))))))....((((((....))))))))))............---------- ( -45.10) >DroVir_CAF1 11624 101 + 1 CAAUGAUGACUGUGGCGCCGCCUGUGGUCCAGCCCUCGCUGGGCGAUAUCGCCUUGAUGCAGGGCGUGGCCACGGGCAGCGGCGGGUAGAGGCCUGCAAAC---------- ...............(((.((((((((.((((((((.((.(((((....)))))....))))))).))))))))))).)))((((((....))))))....---------- ( -56.30) >DroGri_CAF1 7937 101 + 1 CAAUGAUCACGGUGGCGCCACCUGUUGUCCAGCCCUCGCUGGGCGAUAUCGCCUUGAUACAGGGCGUGGCCACGGGCAGCGGUGGGUAGAGGCCUAAAAGU---------- ..........(((.((.(((((.(((((((.(((((..(.(((((....))))).)....)))))((....))))))))))))))))....))).......---------- ( -42.90) >DroMoj_CAF1 7796 96 + 1 CAAUGAUGACUGUGGCGCCACCUGUGGUCCAGCCCUCGCUGGGUGAUAUCGCCUUGAUGCAGGGCGUGGCCACGGGCAAGGGUGGAUAGAGGCCUG--------------- .........((.((.((((.(((((((.((((((((.((.(((((....)))))....))))))).))))))))))....))))..)).)).....--------------- ( -43.40) >DroAna_CAF1 9355 111 + 1 CAAUGAUGACCGUGGCGCCGCCGGUGGUCCAGCCUUCGCUGGGCGAGAUGGCCUUGAUGCAGGGCGUGGCCACUGGGAGAGGUGGAUACAAUCCUGUAAAUAUUAAAAGAA ...........(((.((((.(((((((.((((((((.((.((((......))))....))))))).))))))))))....))))..)))...................... ( -39.80) >DroPer_CAF1 4884 100 + 1 CAAUGAUGACUGUGGCGCCGCCCGUGGUCCAGCCCUCGCUCGGGGAGAUCGCCUUGAUGCAGGGCGUGGCCACCGGCAGGGGCGGGUAGAGACCUGCAA-U---------- ..........(((.((.(((((.((((.((((((((.((((((((......)))))).))))))).))))))).))).)).))((((....))))))).-.---------- ( -47.50) >consensus CAAUGAUGACUGUGGCGCCACCUGUGGUCCAGCCCUCGCUGGGCGAGAUCGCCUUGAUGCAGGGCGUGGCCACGGGCAGCGGUGGGUAGAGGCCUGCAAAU__________ ...............((((.(((((((.((((((((.((.(((((....)))))....))))))).))))))))))....))))........................... (-36.30 = -36.58 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:37 2006