| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,286,246 – 10,286,361 |
| Length | 115 |
| Max. P | 0.621704 |
| Location | 10,286,246 – 10,286,361 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 81.43 |
| Mean single sequence MFE | -28.37 |
| Consensus MFE | -22.01 |
| Energy contribution | -21.65 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.621704 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10286246 115 + 20766785 UAGAGAAAAG-UAUUAAAAAUGCCCAAGGGUCGUGUUAGCAAUGUGUGGCAGCACUACGAUAUUAACGAGGAGUGCGAAAACUUUGCGAUAUGCCGUUAUUGCGGCAACAAUAUAU ..........-.........(((((((.((.((((((.((((...((....(((((.((.......))...)))))....)).))))))))))))....))).))))......... ( -26.90) >DroVir_CAF1 5221 116 + 1 UAAAAAAAAACAUUUGAAAAUGCCUAAAGGUCGCGUUAGCAGUGUUUGGCAGCAUUACGAUAUCAAUGAGGAGUGCGAAAACUUUGCAGUUUGUCGCUAUUGCGGCAAUAAUAUAU .............................((((((.(((((((((......)))))..((((....((..((((......))))..))...)))))))).)))))).......... ( -26.20) >DroPse_CAF1 1 103 + 1 -------------CUAAAGAUGCCAAAGGGACGCGUGAGCAAUGUGUGGCAGCACUACGAUAUCAACGAGGACUGUGAAAACUUUGCGAUAUGCCGCUAUUGCGGUAAUAAUAUAU -------------.......(((.((((....((....))......(.((((..((.((.......))))..)))).)...)))))))...((((((....))))))......... ( -26.10) >DroGri_CAF1 1471 116 + 1 UAGAUAAAACGCAAUAAAAAUGCCUAAAGGUCGCGUUAGCAGUGUGUGGCAGCAUUAUGAUAUCAAUGAGGAGUGCGAAAACUUUGCGGUCUGCCGCUAUUGUGGCAAUAAUAUAU .........(((((......((((...(.(..((....))..).)..))))(((((.(.((....)).)..))))).......)))))...((((((....))))))......... ( -28.30) >DroMoj_CAF1 1498 114 + 1 --GACAAACUUAAAUAAAAAUGCCUAAAGGUCGCGUUAGCAGUGUUUGGCAGCAUUACGACAUCAAUGAGGAGUGCGAAAACUUUGCGGUUUGUCGCUAUUGCGGCAACAAUAUAU --...........................((((((.(((((((((......)))))..((((....((..((((......))))..))...)))))))).)))))).......... ( -27.40) >DroAna_CAF1 4995 111 + 1 ----AAAAAG-CAUAUAUAAUGCCUAAAGGUCGCGUGAGCAGCGUGUGGCAGCACUACGAUAUUAACGAAGAGUGCGAAAACUUUGCGAUAUGCCGCUAUUGCGGCAAUAAUAUAU ----.....(-((.......((((...(.((.((....)).)).)..))))(((((.((.......))...)))))........)))....((((((....))))))......... ( -35.30) >consensus __GAAAAAAG_AAUUAAAAAUGCCUAAAGGUCGCGUUAGCAGUGUGUGGCAGCACUACGAUAUCAACGAGGAGUGCGAAAACUUUGCGAUAUGCCGCUAUUGCGGCAAUAAUAUAU ....................((((...(.(..((....))..).)..))))...............((..((((......))))..))...((((((....))))))......... (-22.01 = -21.65 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:33 2006