Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,285,300 – 10,285,419 |
Length | 119 |
Max. P | 0.539500 |
Location | 10,285,300 – 10,285,419 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.24 |
Mean single sequence MFE | -22.36 |
Consensus MFE | -15.60 |
Energy contribution | -15.88 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.17 |
Mean z-score | -1.80 |
Structure conservation index | 0.70 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539500 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10285300 119 - 20766785 GGUAAUUCGGUUUGCCAAGAA-GAAAACAAACCCAAAUUACAAAAUGUACACAAAUACAAACUCACGAAAAUUCAGUCACGCACAAAACUGUGUUGGUAAACAAGCGCUAGCACGGUGCG .((((((.((((((.......-.....))))))..))))))....((((......))))....................(((((.....(((((((((........)))))))))))))) ( -25.00) >DroSec_CAF1 27436 117 - 1 GG---UUUAAUUUGCCAAAAAGGAAAAUAAACCGAAAUUACAAAAUGUACACAAAUACAAACUCACGAAAAUUCAGUCACGCACAAAACUGUGUUGGUAAACAAGCGCGAGAACGGUGCG ((---((((.(((.((.....))))).))))))............((((......))))....................(((((....(((((((........))))).))....))))) ( -21.70) >DroSim_CAF1 33347 117 - 1 GG---UUUAGUUUGCCAAAAAGGAAAACAAACCGAAAUUACAAAAUGUACACAAAUACAAACUCACGAAAAUUCAGUCACGCACAAAACUGUGUUGGUAAACAAUGGCGAGAACGGUGCG ((---(((.((((.((.....)).))))))))).....(((....((((......))))..(((..((....)).((((.(((((....)))))((.....)).)))))))....))).. ( -20.20) >DroEre_CAF1 32097 117 - 1 AA---UUCGGGUUGCCAAAAAGGAAAACAAACCCAAAUUAUAAAAUCUACACAAAUACAAACUCACGAAAAUUCAGUCACGCACAAAACAGUGCUGGCAAACGCGCACAAGCACGGUGCG ..---...(((((.((.....))......)))))...............(((.......................((((.((((......))))))))...((.((....)).))))).. ( -24.00) >DroYak_CAF1 30626 117 - 1 AA---UUCGGCUUGCCAAAAAGGAAAACAAACCCAAAUUAUAAAAUCUACACAAAUACAAACUCACGAAAAUUCAGUCACGCACAAAACAGUGCUGGCAAACGCGCACACGCACGGUGCG ..---..((..((((((....((.........))..............................................((((......)))))))))).))(((((.(....)))))) ( -20.90) >consensus GG___UUCGGUUUGCCAAAAAGGAAAACAAACCCAAAUUACAAAAUGUACACAAAUACAAACUCACGAAAAUUCAGUCACGCACAAAACUGUGUUGGUAAACAAGCGCAAGCACGGUGCG .........((((((((.................................................((....))......((((......))))))))))))..((((.......)))). (-15.60 = -15.88 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:30 2006