Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,277,681 – 10,277,773 |
Length | 92 |
Max. P | 0.995615 |
Location | 10,277,681 – 10,277,773 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 75.74 |
Mean single sequence MFE | -17.75 |
Consensus MFE | -11.81 |
Energy contribution | -11.49 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.16 |
Mean z-score | -2.29 |
Structure conservation index | 0.67 |
SVM decision value | 2.60 |
SVM RNA-class probability | 0.995615 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10277681 92 - 20766785 UGCUAAAUUGGGUAAAAAAAAAAAAAACAGGUGGAA--UCAAUUAAUGAAGAUUCACUUGAUACCCAAUGACUAAUCAAUUGAGAGCACAUCUU ((((..((((((((.............((((((.((--((..........)))))))))).))))))))......((....)).))))...... ( -18.04) >DroSec_CAF1 19629 84 - 1 UGCUAGAUUGGGUAAAAA---------CAAGUGCAAAACUCUUUAAAAUUGAUUCACUUGACACCCAUUGAUUUAGCAAUUCAGAGCACACCC- (((((((((((((.....---------(((((((((............)))...))))))..)))))...))))))))...............- ( -17.30) >DroSim_CAF1 25449 84 - 1 UGCUAGAUUGGGUAAAAA---------CAAGUGCAAAACUCUUUAAAAUUGAUGCAUUUGACACCCAUUGACUUAGCAAUUCAGAGCACAUCC- ((((((..(((((.....---------((((((((....((.........))))))))))..))))).....))))))...............- ( -17.90) >consensus UGCUAGAUUGGGUAAAAA_________CAAGUGCAAAACUCUUUAAAAUUGAUUCACUUGACACCCAUUGACUUAGCAAUUCAGAGCACAUCC_ ((((....(((((..............((((((((.................))))))))..))))).((......))......))))...... (-11.81 = -11.49 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:25 2006