Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,272,675 – 10,272,768 |
Length | 93 |
Max. P | 0.765301 |
Location | 10,272,675 – 10,272,768 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 87.63 |
Mean single sequence MFE | -22.10 |
Consensus MFE | -14.82 |
Energy contribution | -16.82 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.19 |
Mean z-score | -2.28 |
Structure conservation index | 0.67 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.765301 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10272675 93 + 20766785 AAACAAUGCAAAGUGUGCACGCCACCCUAUCUGCCCGAAAUGCCAAAGAGCGUUGCAGAAAUGGUCACACUUAAAGUUGCGACAAUAAUACAA ...((((...(((((((...((((.....(((((....(((((......))))))))))..)))))))))))...)))).............. ( -22.30) >DroSec_CAF1 14700 93 + 1 AAACAAUACAAAGUGUGCACGCCACCUUUUCUGCCCGAAAUGCCAAAGAGCUUUGCAGAAGUGGUCACACUUAAAGUUGCGACAAUAAUACAA ...((((...(((((((...(((((...((((((...(((.((......)))))))))))))))))))))))...)))).............. ( -22.50) >DroSim_CAF1 16613 93 + 1 AAACAAUACAAAGUGUGCACGCCACCUUUUCUGCCCGAAAUGCCAAAGAGCUUUGCAGAGUUGGUCACACUUAAAGUUGCGACAAUAAUACAA ...((((...(((((((......(((..((((((...(((.((......)))))))))))..))))))))))...)))).............. ( -20.00) >DroYak_CAF1 16785 93 + 1 AAACAAAGCGAAGUGUGCACGUCGCUUUUUGUGCCCGAAAUGCCAAAAAGAGUUAUUGAUGUGGUCACACUUAAAUACGCGAAAAUAAUACAA .......((((((((((((((((((((((((.((.......)))))))))......)))))))..))))))).....)))............. ( -23.60) >consensus AAACAAUACAAAGUGUGCACGCCACCUUUUCUGCCCGAAAUGCCAAAGAGCGUUGCAGAAGUGGUCACACUUAAAGUUGCGACAAUAAUACAA ...((((...(((((((...(((((...((((((....(((((......)))))))))))))))))))))))...)))).............. (-14.82 = -16.82 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:24 2006