Locus 2975

Sequence ID 2R_DroMel_CAF1
Location 10,271,600 – 10,271,694
Length 94
Max. P 0.585409
window4918

overview

Window 8

Location 10,271,600 – 10,271,694
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 80.41
Mean single sequence MFE -23.35
Consensus MFE -14.90
Energy contribution -15.10
Covariance contribution 0.20
Combinations/Pair 1.08
Mean z-score -1.50
Structure conservation index 0.64
SVM decision value 0.10
SVM RNA-class probability 0.585409
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10271600 94 - 20766785
ACUCGCAUCGCCUGGAAACGGGCUAAUCCCGCAUCGAACUGCAAUUUAAAGCGGUUUAAUAGUAUUUAUUCCUCAACGUGAUGACAUAACCAAG
....((((((((((....))))).......((((..((((((........))))))..)).))................)))).)......... ( -24.60)
>DroPse_CAF1 14758 88 - 1
ACACGCAUAGCCUGGAAGCGGGCUAGGCCGGCAUCGAACUGCAAAACGAGGAAA-U---UAAUAUUUAUCCC--AGCCUGAUGACAUAACCAUU
....((.(((((((....))))))).)).(((.(((..........)))(((.(-.---.......).))).--.)))................ ( -20.30)
>DroSim_CAF1 15547 94 - 1
ACUCGCAUCGCCUGGAAACGGGCUAAUCCCGCAUCGAACUGCAACGUACAGCGGUUUAAUAGCAUUUAUUCCACAUAGUGAUGACAUAACCAAG
....((((((((((....))))).......((((..((((((........))))))..)).))................)))).)......... ( -27.00)
>DroEre_CAF1 17458 94 - 1
ACGCGCAUCGCCUGGAAACGGGCCAAUCCCGCAUCGAACUGCAAUGUAAAGCGGUUUAAUAGCAUUUAGCCCGCAUUGUGAUGACAUAACCAAG
..(((....(((((....))))).......((((..((((((........))))))..)).))........))).(((((....)))))..... ( -27.40)
>DroYak_CAF1 15711 94 - 1
ACGCGCAUCGCUUGGAAACGGGCCAAUCCCGCAUCGAACUGCAAUGUAAAGCGAUUUAAUAGCAUUUAUUCCACAACGUGAUGACAUAACCAAG
....(((((((.(((((..(((.....)))((((..((.(((........))).))..)).)).....)))))....)))))).)......... ( -20.50)
>DroPer_CAF1 14724 88 - 1
ACACGCAUAGCCUGGAAGCGGGCUAGGCCGGCAUCGAACUGCAAAACGAGGAAA-U---UAAUAUUUAUCCC--AGCCUGAUGACAUAACAAUU
....((.(((((((....))))))).)).(((.(((..........)))(((.(-.---.......).))).--.)))................ ( -20.30)
>consensus
ACACGCAUCGCCUGGAAACGGGCUAAUCCCGCAUCGAACUGCAAUGUAAAGCGAUUUAAUAGCAUUUAUCCC_CAACGUGAUGACAUAACCAAG
....((((((((((....))))).......(((......))).....................................)))).)......... (-14.90 = -15.10 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:23 2006