Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,247,863 – 10,247,961 |
Length | 98 |
Max. P | 0.518357 |
Location | 10,247,863 – 10,247,961 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 78.61 |
Mean single sequence MFE | -24.63 |
Consensus MFE | -15.09 |
Energy contribution | -15.73 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.12 |
Mean z-score | -1.39 |
Structure conservation index | 0.61 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518357 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10247863 98 + 20766785 AUCGUCGAAACUUUUGCCAUAGCUCGAACAUAAUUAUAAAAGUUUCGACAAGUAUUUGCCCAGGUGGGC------------CAGUGUUCGUGCAAAAAAUAAGUCGAA--GA ...(((((((((((((....................)))))))))))))...((((.((((....))))------------.))))((((.((.........))))))--.. ( -23.95) >DroPse_CAF1 69876 104 + 1 GUGGCUAAAACUUUUGCCAUUGCUCGAACAUAAUUAUAAAAGUUUCGACAAGUAUUUGGCCAGGUGGGCAA---GGA---GCAGU-UCCACACAGAA-ACAAAACGAAACGG (((((..........))))).....................((((((....((.(((((((.....)))..---(((---(...)-)))...)))).-))....)))))).. ( -21.60) >DroEre_CAF1 81261 107 + 1 AUCGUCGAAACUUUUGCCAUAGCUCGAACAUAAUUAUAAAAGUUUCGACAAGUAUUUGCCCAGGUGGGCCA---ACACAGCCAGUGUUCGGGCAAAAAACAGGUUGUA--GA ...(((((((((((((....................))))))))))))).....(((((((.((....))(---((((.....))))).)))))))............--.. ( -30.95) >DroYak_CAF1 78255 110 + 1 AUCGUCGAAACUUUUGCCAUAGCUCGAACAUAAUUAUAAAAGUUUCGACAAGUAUUUGCCCAGGUGGGCCAGCAACGCAGCCAGUGUUCGUGCAAAAAAUAAGUUGAA--GA .(((((((((((((((....................)))))))))))))...(((((((((....))))..(((((((.....))))...)))...)))))....)).--.. ( -26.95) >DroAna_CAF1 78122 89 + 1 AUCGUCGGAACUUUUGCCAUAGCUCGAACAUAAUUAUAAAAGUUUCGACAAGUAUUUGCCCAGGUGGGCUA---G-----------CUCUUGCAAAAAACAAA--------- ...(((((((((((((....................)))))))))))))..((.(((((((....))))..---(-----------(....)).))).))...--------- ( -22.75) >DroPer_CAF1 67384 104 + 1 GUGGCUAAAACUUUUGCCAUUGCUCGAACAUAAUUAUAAAAGUUUCGACAAGUAUUUGGCCAGGUGGGCAA---GGA---GCAGU-UCCAUACAGAA-ACAAAACGAAACGG (((((..........))))).....................((((((....((.(((((((.....)))..---(((---(...)-)))...)))).-))....)))))).. ( -21.60) >consensus AUCGUCGAAACUUUUGCCAUAGCUCGAACAUAAUUAUAAAAGUUUCGACAAGUAUUUGCCCAGGUGGGCAA___G_A____CAGU_UUCGUGCAAAAAACAAAUCGAA__GA ...(((((((((((((....................)))))))))))))........((((....))))........................................... (-15.09 = -15.73 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:19 2006