Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,744,879 – 1,744,970 |
Length | 91 |
Max. P | 0.556087 |
Location | 1,744,879 – 1,744,970 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 77.45 |
Mean single sequence MFE | -30.05 |
Consensus MFE | -18.41 |
Energy contribution | -18.80 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.30 |
Mean z-score | -1.38 |
Structure conservation index | 0.61 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.556087 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1744879 91 - 20766785 AGUUACAUCAGAAACAUA--AAAUUGAGGGAUAGAGCUCUUACCCCCGAUGAGGGGCAGCUGUUUGGGCGGCUGCUCUUCCACGGGACUGAGU .......((((.......--....((((((......))))))..((((..(((((((((((((....)))))))))))))..)))).)))).. ( -37.40) >DroSec_CAF1 11817 91 - 1 AGUUACUUCAGAAACAUU--AGAUUGAGGGAUAGAGCUCUUACCCUCGAUGAGGGGCAGCUGUUUUGGCGGCAGCUCUUCCACGGGACUAAGG (((..(............--..((((((((..((....))..))))))))(((((((.(((((....))))).)))))))...)..))).... ( -30.30) >DroSim_CAF1 12044 91 - 1 AGUUACUUCAGAAACAUU--AGAUUGAGGGAUAGAGCUCUUACCCUCGAUGAGGGGAAGCUGUUUUGGCGGCAGCUCUUCCACGGGACUAAGG (((..(............--..((((((((..((....))..))))))))((((((..(((((....)))))..))))))...)..))).... ( -27.60) >DroEre_CAF1 12523 91 - 1 CCUUACAUCUGGAUCAUU--AGAUUGUGGAACAGAGCUCUUACCAUCGAUGAGGGGCAGCUGCUUGGGCGGCUGCUCUUCCACGGGACUGAGC .......((((..((((.--.....))))..))))((((...((..((..(((((((((((((....)))))))))))))..))))...)))) ( -38.00) >DroYak_CAF1 15486 91 - 1 CCUUACAUCUGGAUCAUU--AGACUUUGGAAUAAAACACUUACCAUCGAUGAGGGGCAGCUGUUUGGGUGGCUGCUCUUCCACAGGACUGAGC .((((..((((.......--...(..(((.............)))..)..((((((((((..(....)..))))))))))..))))..)))). ( -23.82) >DroAna_CAF1 10057 91 - 1 --GGGCUGUAGAAAUGUGUGUAAUUCAAGGGGGAAUCACUUACCUUCGAUGAGAGGUAACGGCUUGGGCGGCACCUCCUCCACGGGGCUGAGC --(((((((........(((..((((......))))))).((((((......)))))))))))))...((((.(((.......)))))))... ( -23.20) >consensus AGUUACAUCAGAAACAUU__AGAUUGAGGGAUAGAGCUCUUACCCUCGAUGAGGGGCAGCUGUUUGGGCGGCAGCUCUUCCACGGGACUGAGC ......................................((((..((((..(((((((.(((((....))))).)))))))..))))..)))). (-18.41 = -18.80 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:50 2006