Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,232,900 – 10,233,000 |
Length | 100 |
Max. P | 0.984905 |
Location | 10,232,900 – 10,233,000 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 75.39 |
Mean single sequence MFE | -29.22 |
Consensus MFE | -12.87 |
Energy contribution | -12.96 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.23 |
Mean z-score | -2.72 |
Structure conservation index | 0.44 |
SVM decision value | 1.99 |
SVM RNA-class probability | 0.984905 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10232900 100 + 20766785 CCUUUUCCAACUUUUUAUGCCCUGAACUGCCCACUUGGCCCACAGCCACCCA-CUUUGGGGCAACUUGCCGACUGCGCUUAAUUAAAGCGCAGGGUCACGU .................(((((..((.((......((((.....))))..))-.))..)))))((.((((..((((((((.....)))))))))).)).)) ( -31.10) >DroSec_CAF1 61883 99 + 1 CCUGCUCCAACUUUUUAUGGCCUGAAACGCCCACUUGGC-CACCGCCACCCA-CUUUGGGGCAACUUUCUGACUGCGCUUAAUUAAAGCGCAGGGUCACGU ((((((((((........(((.......)))....((((-....))))....-..)))))))).........((((((((.....))))))))))...... ( -31.80) >DroSim_CAF1 62213 81 + 1 CCUUCUCCAACUUUUUAUGCCCUGAACCGCC-------------------CA-CUUUGGGGCAACUUUCCGACUGCGCUUAAUUAAAGCGCAGGGUCACGU ......((.........(((((..((.....-------------------..-.))..))))).........((((((((.....))))))))))...... ( -25.90) >DroEre_CAF1 66825 99 + 1 CCUUCUCCAACUUUUUAUGGCCUGAACCGCCCACUCGGC-CAGCGCCGCCCA-CUUUGUGGCGACUUUCCGACUGCGCUUAAUUAAAGCGCAGGGUCACGU .................(((((............((((.-.((((((((...-....)))))).))..))))((((((((.....)))))))))))))... ( -35.30) >DroYak_CAF1 62199 98 + 1 CCCUUUCUAACUU-UUAUGGCCAGAACCGCCCACUUGGC-CACCGCCUCCUC-CUUUGGGGCGACUUUCCGACUGCGCUUAAUUAAAGCGCAGGGUCACGU .............-....(((.......))).((.((((-(..((((.((..-....)))))).........((((((((.....))))))))))))).)) ( -32.90) >DroAna_CAF1 65247 83 + 1 ---ACUUCAAGAUUUUAAACCAAGAAAUCCU-------------GCCUUUCAGUUGUCGGGCAUCCU--UGGCUGAGCUUAAUUAAAACGCAGGGUCACGU ---....................(..(((((-------------((.(((.(((((((((.((....--)).))))...))))).))).)))))))..).. ( -18.30) >consensus CCUUCUCCAACUUUUUAUGCCCUGAACCGCCCACUUGGC_CACCGCCACCCA_CUUUGGGGCAACUUUCCGACUGCGCUUAAUUAAAGCGCAGGGUCACGU ......((....................(((............................)))..........((((((((.....))))))))))...... (-12.87 = -12.96 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:14 2006