Locus 2965

Sequence ID 2R_DroMel_CAF1
Location 10,226,381 – 10,226,482
Length 101
Max. P 0.890758
window4904

overview

Window 4

Location 10,226,381 – 10,226,482
Length 101
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 95.18
Mean single sequence MFE -21.16
Consensus MFE -18.29
Energy contribution -18.52
Covariance contribution 0.22
Combinations/Pair 1.12
Mean z-score -1.87
Structure conservation index 0.86
SVM decision value 0.96
SVM RNA-class probability 0.890758
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10226381 101 + 20766785
AGCACAAGUGCAGUGCUCACAUAAAUCACGCAUACGCACUGUGGCACACUGCCUGCCGCAAGAGGAAAAACUAUAAAUAAGCCAGACGACACUAUAAACAA
.((...(((((.((((.............))))..)))))((((((.......)))))).....................))................... ( -19.22)
>DroSec_CAF1 55487 101 + 1
AGCACAAGUGCAGUGCUCACAUAAAUCACGCAUACGCACUGUGGCAGACUGACUGCCGCAAGAGGAAAAACUAUAAAUAAACCAGACGACACUAUAAACAA
.(((....)))((((.((...........((....))..((((((((.....))))))))...........................))))))........ ( -22.50)
>DroSim_CAF1 55826 101 + 1
AGCACAAGUGCAGUGCUCACAUAAAUCACGCAUACGCACUGUGGCAGACUGCCUGCCGCAAGAGGAAAAACUAUAAAUAAACCAGACGACACUAUAAACAA
.(((....)))((((.((...........((....))..((((((((.....))))))))...........................))))))........ ( -22.90)
>DroEre_CAF1 59956 101 + 1
AGCACAAGUGCAGAGCUCACAUAAAUCACGCAUACGCACUGUGGCAGACUGCCUGCCGCAAGAGGAAAAACUAUAAAUAAGCCAGACGACACUAUAAACAA
.(((....)))....(((...........((....))..((((((((.....)))))))).)))..................................... ( -21.10)
>DroYak_CAF1 55440 101 + 1
AGCACAAGUGCAGAGCUCACAUAAAUCACGCAUACGCACUGUGGCAGACUGCCUGCCGCAAGAGGAAAAACUAUAAAUAAGCCAGACGACACUAUAAACAA
.(((....)))....(((...........((....))..((((((((.....)))))))).)))..................................... ( -21.10)
>DroAna_CAF1 58125 101 + 1
AACACAAGUGCGGAGCUUACAUAAAUCACGCAUACGCACUGUGGCACAGUGCCUGCCACAAGAGGCCAACCUAUAAAUAACCCAGACGACACUAUAAACAA
......((((((..((.............))...))))))((((((.......))))))...(((....)))............................. ( -20.12)
>consensus
AGCACAAGUGCAGAGCUCACAUAAAUCACGCAUACGCACUGUGGCAGACUGCCUGCCGCAAGAGGAAAAACUAUAAAUAAGCCAGACGACACUAUAAACAA
.(((....)))....(((...........((....))..((((((((.....)))))))).)))..................................... (-18.29 = -18.52 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:09 2006