| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,225,764 – 10,225,870 |
| Length | 106 |
| Max. P | 0.508282 |
| Location | 10,225,764 – 10,225,870 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 82.10 |
| Mean single sequence MFE | -25.63 |
| Consensus MFE | -18.70 |
| Energy contribution | -19.03 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.73 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.508282 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10225764 106 - 20766785 UUCCCUUAGUCCGA--GAACGAGUCCUGGCCGAAUCCGGAAUGCCAUUUGGCAUUAAAAUUCAAGCAGCAGA-----GCGG-GGCAAAAGGAUAGCAACAGAACAAAAAAAAAA ..............--......(((((.(((((((....((((((....))))))...))))..((......-----))..-)))...)))))..................... ( -24.10) >DroSec_CAF1 54873 106 - 1 CUCCCUUAGUCCGACAGAACGAGUCCUGGCCCAAUCCGGAAUGCCAUUUGGCAUUAAAAUUCAAGCAGCAGA-----GCGG-GGCAAAAGGAUAGCAAAAGAACAAAAAAAA-- ......................(((((.((((.......((((((....)))))).........((......-----)).)-)))...)))))...................-- ( -24.60) >DroSim_CAF1 55213 104 - 1 CUCCCUUAGUCCGAGAGAACGAGUCCUGGCCCAAUCCGGAAUGCCAUUUGGCAUUAAAAUUCAAGCAGCAGA-----GCGG-GGCAAAAGGAUAGCAAAAGAACAAAAAA---- ....(((.((.(....).))..(((((.((((.......((((((....)))))).........((......-----)).)-)))...))))).....))).........---- ( -26.50) >DroEre_CAF1 59345 90 - 1 -UCCCUUAGUCCGA--GACCGAGUCCUGGCCCAAUCCGGAAUGCCAUUUGGCAUUAAAAUUCAAGCAGCAGA-----GCGG-CGCAAAAGGAUAGCAAA--------------- -...((..(((...--)))..))((((.((((.......((((((....)))))).........((......-----))))-.))...)))).......--------------- ( -22.30) >DroYak_CAF1 54839 90 - 1 -UCCCUUAGUCCGA--GACGGAGUCCUGGCCCAAUCCGGAAUGCCAUUUGGCAUUAAAAUUCAGGCAGCAGA-----GCGG-GGCAAAAGGAUAGCAAA--------------- -........((((.--..))))(((((.((((.......((((((....)))))).........((......-----)).)-)))...)))))......--------------- ( -27.30) >DroAna_CAF1 57591 95 - 1 --CCUCUGGUCCGA--UACUGAGUCCUGGCUCAAUCCGGAAUGCCAUUUGGCAUUAAAAUUCAAGCAGCAGCAAGGAGGGGCGGCAAAUGGAAGCCAAA--------------- --(((((..((((.--...(((((....)))))...))))(((((....)))))..........((....))..)))))(((..(.....)..)))...--------------- ( -29.00) >consensus _UCCCUUAGUCCGA__GAACGAGUCCUGGCCCAAUCCGGAAUGCCAUUUGGCAUUAAAAUUCAAGCAGCAGA_____GCGG_GGCAAAAGGAUAGCAAA_______________ ........((((........((((.((((......))))((((((....))))))...))))..((.((........))....))....))))..................... (-18.70 = -19.03 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:08 2006