Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,742,725 – 1,742,826 |
Length | 101 |
Max. P | 0.749517 |
Location | 1,742,725 – 1,742,826 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 88.75 |
Mean single sequence MFE | -47.58 |
Consensus MFE | -39.10 |
Energy contribution | -39.97 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.09 |
Mean z-score | -2.18 |
Structure conservation index | 0.82 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.749517 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1742725 101 - 20766785 GACCCCUCCUUCAUCGCCGGCAUGCGAGGUGUUGUUGGAGUCAAAGCGCCGUCGCUUUCGGUUCUUUCGCGUGCGAUAGUGGUGCUGCCGGUGGUGGAGCA---------- ........((((((((((((((.(((.((((((.(((....)))))))))(((((...(((.....)))...))))).....)))))))))))))))))..---------- ( -44.10) >DroSec_CAF1 9547 101 - 1 AACCGCUCCUUCAUCGCCGGCAUGCGAGGUGUUGUUGGAGUCAAAGCGCCGUCGCUUUCGGUUCUUUCGCGUGCGAUGGUGGUGCUGCCGGUGGUGGAGCA---------- ....(((((...((((((((((.(((........(((....)))..(((((((((...(((.....)))...))))))))).)))))))))))))))))).---------- ( -46.70) >DroSim_CAF1 9772 101 - 1 GACCGCUCCUUCAUCGCCGGCAUGCGAGGUGUUGUUGGAGUCAAAGCGCCGUCGCUUUCGGUUCUUUCGCGUGCGAUGGUGGUGCUGCCGGUGGUGGAGCA---------- ....(((((...((((((((((.(((........(((....)))..(((((((((...(((.....)))...))))))))).)))))))))))))))))).---------- ( -46.70) >DroEre_CAF1 10936 101 - 1 GACUACUGCUUCAUCGCCGGCAUGCGAGGUGUUGUUGGAGUCAAAGCGCCGUCGCUUUCGGUUCUUUCGCGUGCGAUGGUGGUGCUGCCGGUGGUGAAGCA---------- .......(((((((((((((((.(((........(((....)))..(((((((((...(((.....)))...))))))))).)))))))))))))))))).---------- ( -49.80) >DroYak_CAF1 12442 101 - 1 GACCACUCCUUCAUCGCCGGCAUGCGAGGUGUUGUUGGAGUCGAAGCGCCGUCGCUUUCGGUUCUUUCGCGUGCGAUGGUGGUGCUGCCGGUGGUGGAGCA---------- ........((((((((((((((.(((........(((....)))..(((((((((...(((.....)))...))))))))).)))))))))))))))))..---------- ( -44.60) >DroAna_CAF1 7876 111 - 1 CACGCCGACCUCGUCGCCCGCAUGCGAGGUGUUGUUGGAGUCGAACCGCCUGCGCUUGCGGUUCUUGCGAGUUCGGUGGUGGUGCUGCCGGUGGUGCAGCGGCAGCUGGAG ..((((((.(((((...(((((.((((((((...(((....)))..))))).))).))))).....))))).)))))).....(((((((.((...)).)))))))..... ( -53.60) >consensus GACCACUCCUUCAUCGCCGGCAUGCGAGGUGUUGUUGGAGUCAAAGCGCCGUCGCUUUCGGUUCUUUCGCGUGCGAUGGUGGUGCUGCCGGUGGUGGAGCA__________ ........((((((((((((((.(((........(((....)))..(((((((((...(((.....)))...))))))))).)))))))))))))))))............ (-39.10 = -39.97 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:49 2006