Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,200,073 – 10,200,174 |
Length | 101 |
Max. P | 0.819411 |
Location | 10,200,073 – 10,200,174 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 79.35 |
Mean single sequence MFE | -23.40 |
Consensus MFE | -15.39 |
Energy contribution | -15.43 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.29 |
Mean z-score | -1.87 |
Structure conservation index | 0.66 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819411 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10200073 101 - 20766785 CAAAGAGAUAAAUAUAAGACGGAAGUUUGCUGGUGAAAAAAAA----------AAACUUUAUACAGGUGCUAAUCAAAGA------CGCGGGGCGCUUUCAUGAUAAAGUUUUUAUU ................((((....)))).............((----------(((((((((..(((((((...(.....------.)...))))))).....)))))))))))... ( -19.40) >DroSec_CAF1 28246 101 - 1 CAAAGAGAUAAAUAUAGGACGGAAGUUUGCUGGUGGAAAAAAA----------AAACUUUAUCCAGGUGCUAAUCAAAGA------GACGGGGCGCCUUUAUGAUGAAGUUUUUAUU ................((((....)))).............((----------((((((((((.(((((((..((.....------))...)))))))....))))))))))))... ( -25.70) >DroSim_CAF1 28502 100 - 1 CAAAGAGAUAAAUAUAGGACGGAAGUUUUCCGGUG-AAAAAAA----------AAACUUUAUCCAGGUGCUAAUCAAAGA------GACGGGGCGCUUUUAUGAUGAAGUUUUUAUU ...................((((.....))))...-.....((----------((((((((((.(((((((..((.....------))...)))))))....))))))))))))... ( -23.50) >DroEre_CAF1 32797 106 - 1 AAAAGGAAUAAAUAUAGGGCGGAAGUUUGCGGGCGAA----AGAGAGGAGAGCAAACUUUAUCCAGGUGCUAAUCAAAGA-------ACUGAGUGCUUUCAUGAUUAAGUUUUUAAU .(((((..(((.((((((((((((((((((...(...----.)........)))))))))...(((...((......)).-------.)))..)))))).))).)))..)))))... ( -19.70) >DroYak_CAF1 29034 117 - 1 AAAAGCGAUAAAUACAGGACGGAAGUUUGCUGGCGUAAAAAAAGGAAGAGAGCAAACUUUAUCCAGGUGCUAAUCAAAGAAAAAGAGACGGAGCGCUGCCCUGUUUAAGUUUUUAUU ((((((.......(((((..(((((((((((..(.............)..))))))))...))).((((((..((...........))...))))))..)))))....))))))... ( -28.72) >consensus CAAAGAGAUAAAUAUAGGACGGAAGUUUGCUGGUGAAAAAAAA__________AAACUUUAUCCAGGUGCUAAUCAAAGA______GACGGGGCGCUUUCAUGAUGAAGUUUUUAUU ................((((....)))).........................((((((((((.(((((((....................)))))))....))))))))))..... (-15.39 = -15.43 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:52 2006