Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,191,284 – 10,191,388 |
Length | 104 |
Max. P | 0.817299 |
Location | 10,191,284 – 10,191,388 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 78.03 |
Mean single sequence MFE | -31.43 |
Consensus MFE | -17.88 |
Energy contribution | -19.00 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.35 |
Mean z-score | -1.93 |
Structure conservation index | 0.57 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.817299 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10191284 104 + 20766785 GGUCGCACUGAAGGUUCAACUUCUUCCGUGACAUCUAAACGUUCCACUACCGAUUCCACAAAUCCAGUUUGUGGUGGAG---CCGGAGCUUGUAUAUCCACUAUUUC .(((((...((((......))))....)))))........((((((((((.((((..........)))).)))))))))---).(((.........)))........ ( -28.30) >DroSec_CAF1 19338 104 + 1 GGUCGCAUUGGAGGUUCAACUUCUUCCGUGACAUCUAUACGUUCCACUACCGACUCCACAAAUCCAGUUUGUGGUGGAG---CCGGAGCUGGUGUAUCCCCUAUUUC .(((((...(((((.....)))))...)))))........((((((((((.((((..........)))).)))))))))---).(((((....)).)))........ ( -31.80) >DroSim_CAF1 19572 104 + 1 GGUCGCAUUGGAGGUUCAACUUCUUCCGUGACAUCUAUACGUUCCACUACCGACUCCACAAAUCCAGUUUGUGGUGGAG---CCGGAGCUGGUGUAUCCACUAUUUC .(((((...(((((.....)))))...)))))........((((((((((.((((..........)))).)))))))))---)..(((.(((((....))))).))) ( -33.40) >DroEre_CAF1 24170 104 + 1 GGUCGCAUUGGUGGUUCAACCUCCUCAGUGACUUCUAUGCGUUCCACUACCGACUCCACAAAUCCAGUUUGUGGUGGAG---CCAGAGCUGGUGAGUCCACUAUUUC ((((((...((.((.....)).))...))))))....((.((((((((((.((((..........)))).)))))))))---)))(((.(((((....))))).))) ( -35.60) >DroYak_CAF1 20008 104 + 1 GGUCGCAUUGGAGGUUCAACUUCUUCAGUGACUUCUAUGCGUUCCACUACUGACUCCACAAAUCCAGUUUGUGGUGGAG---CCGGAGCUUGAGAAUCCACUAUUUC .(((((...(((((.....)))))...)))))((((..((((((((((((.((((..........)))).)))))))))---)....))...))))........... ( -31.90) >DroAna_CAF1 19280 98 + 1 G---------GAGCCUCAACUUCUGUGGUCUCUUCAAUAUUCUCAACGAGGGUUUCCACUAAACCGGGUUGGCUUAUAGAAAUAGUGGCUUCAGGUAUCACUACCUC (---------(((((.(...((((((((((..(((......(((...)))(((((.....))))))))..))).)))))))...).))))))(((((....))))). ( -27.60) >consensus GGUCGCAUUGGAGGUUCAACUUCUUCCGUGACAUCUAUACGUUCCACUACCGACUCCACAAAUCCAGUUUGUGGUGGAG___CCGGAGCUGGUGUAUCCACUAUUUC .(((((...(((((.....)))))...))))).(((.....(((((((((.((((..........)))).))))))))).....))).................... (-17.88 = -19.00 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:48 2006