| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,183,477 – 10,183,568 |
| Length | 91 |
| Max. P | 0.638204 |
| Location | 10,183,477 – 10,183,568 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 85.31 |
| Mean single sequence MFE | -29.80 |
| Consensus MFE | -20.06 |
| Energy contribution | -20.14 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638204 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10183477 91 + 20766785 ACAAUGAUACGC---------GAAACACGCGACCACAAAUGGUCAGUGUGGCCGUCGGCACAGUUUCAACGGAUAUCCUGAAUGGGCGCACAUCAUUCUU ..((((((..((---------(.....)))(((((....))))).(((((.(((((((....(((......)))...))).)))).)))))))))))... ( -27.70) >DroSec_CAF1 11569 91 + 1 ACAAUGAUACGC---------GAAACACGCGACCACAAAUGGUCAGUGUGGCCGUCGGCACAGAUUCAACGGAUAUCCUGAAUGGGCGCACAUCAUUCUU ..((((((..((---------(.....)))(((((....))))).(((((.(((((((.....(((.....)))...))).)))).)))))))))))... ( -28.80) >DroSim_CAF1 11698 91 + 1 ACAAUGAUACGC---------GAAACACGCGACCACAAAUGGUCAGUGUGGCCGUCGGCACAGAUUCAGCGGAUAUCCUGAAUGGGCGCACAUCAUUCCU ..((((((..((---------(.....)))(((((....))))).(((((.(((((((.....(((.....)))...))).)))).)))))))))))... ( -28.80) >DroEre_CAF1 16377 91 + 1 AGUAUGACACGC---------GGAACACGCGACCACAAGUGGUUAGUGUGGCCAACGGCACAGAUCGGACGGAAAUCCUGAAUGGGAGCACUUCUGUCUU ......((((((---------(.....)))(((((....))))).)))).(((...))).......((((((((.((((....))))....)))))))). ( -29.70) >DroYak_CAF1 11967 100 + 1 AGUAUGACACGCGGAAUACGCGGAACACGCGACCACAAAUGGUCAGUGUGGCCGUCGGCACAGAUCAGACGGAUAUCCUGAAUGAAAGCACUUCAUUCUU ..........(((.....)))(((.((((((((((....))))).))))).(((((...........)))))...))).(((((((.....))))))).. ( -34.00) >consensus ACAAUGAUACGC_________GAAACACGCGACCACAAAUGGUCAGUGUGGCCGUCGGCACAGAUUCAACGGAUAUCCUGAAUGGGCGCACAUCAUUCUU .........................((((((((((....))))).)))))(((...)))...........((....)).((((((.......)))))).. (-20.06 = -20.14 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:39 2006