Locus 295

Sequence ID 2R_DroMel_CAF1
Location 1,733,193 – 1,733,300
Length 107
Max. P 0.760988
window613

overview

Window 3

Location 1,733,193 – 1,733,300
Length 107
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 79.38
Mean single sequence MFE -37.70
Consensus MFE -19.73
Energy contribution -21.32
Covariance contribution 1.59
Combinations/Pair 1.20
Mean z-score -2.20
Structure conservation index 0.52
SVM decision value 0.50
SVM RNA-class probability 0.760988
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1733193 107 - 20766785
UGCAGUUCCUCAAGAGUUCCGGGAUUUGUCAAUUCGGGCUUUUUAGCUUCCGCCUUUAAGGCCUCCACCAUCUGUGGCGGCACUCCGCCGGAAUACUGCGGUGCCUC
.((((((((....((((.((((((((....)))))(((((((...((....))....)))))))((((.....))))))).))))....)))..)))))........ ( -32.00)
>DroSec_CAF1 82 107 - 1
UGCAGCUCCUCAAGUGUUCCGGGAUUUAUCAAUUCAGGCUUUUUAGCUUCCGCCUUUAAAGCCUCCACGAUCAGUGGCGGCAUUCCGCCGGAAUACUGGGGUGCCUC
....((.(((((.(((((((((..((((.......(((((....))))).......))))(((.((((.....)))).)))......)))))))))))))).))... ( -42.14)
>DroSim_CAF1 82 107 - 1
UGCAGCUCCUCAAGUGUUCCGGGAUUUAUCAAUUCAGGCUUUUUAGCUUCCGCCUUUAAAGCCUCCACGAUCAGUGGCGGCAUUCCGCCGGAAUACUGGGGUGCCUC
....((.(((((.(((((((((..((((.......(((((....))))).......))))(((.((((.....)))).)))......)))))))))))))).))... ( -42.14)
>DroEre_CAF1 82 107 - 1
UGCAGCUCCUCAACUGUUCCGGGAUUCGCCAAUUCAGGCUUUCCAGCUUCUGCCUUUAAAGCCUCCACCAUCUGUGGAGGCAUUCCGGCGGAAUACUCCGGUGUCUC
.((((........)))).(((((....(((......)))........(((((((......((((((((.....)))))))).....)))))))...)))))...... ( -37.90)
>DroYak_CAF1 82 107 - 1
UGCAGCUCCUCAACUGUCCCGGGAUUUGCCAAUUCACUCAUUCCAACUUCUGCCCUUAAAGCCUCCACCAUCUGUGGCGGCAUUCCGGCGGAAUACUCCGUUGCCUC
.(((((..............(((((..(........)..)))))...(((((((......(((.((((.....)))).))).....)))))))......)))))... ( -29.90)
>DroAna_CAF1 82 98 - 1
UGCAGCUCCUCGACGGUGCCCGGGUUCUCCA------GCUUGUGCGCCUCGGACUCCAGCGCCUGCACCAGCUGGGACGGCAUGCCGGCGGUG---AGUGGCGCCUC
((.((.(((..((.(((((.(((((......------))))).)))))))))))).))(((((..((((.(((((.(.....).)))))))))---...)))))... ( -42.10)
>consensus
UGCAGCUCCUCAACUGUUCCGGGAUUUGCCAAUUCAGGCUUUUUAGCUUCCGCCUUUAAAGCCUCCACCAUCUGUGGCGGCAUUCCGCCGGAAUACUGCGGUGCCUC
....((.((.....((((((((((...........((((......))))...........(((.((((.....)))).)))..)))..)))))))....)).))... (-19.73 = -21.32 +   1.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:48 2006