Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,182,193 – 10,182,288 |
Length | 95 |
Max. P | 0.512653 |
Location | 10,182,193 – 10,182,288 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.35 |
Mean single sequence MFE | -31.65 |
Consensus MFE | -21.78 |
Energy contribution | -23.95 |
Covariance contribution | 2.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.69 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512653 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10182193 95 + 20766785 CACUGC--------------------CGUCC-GAGAGUGGCCAUGCAUGAGGGC---UCCCAUAAAAUUGGGUCAAUUGCUGUUAACAAUUUGGCAGCGCAAUCUUU-UGGCCGUUUCGA ......--------------------....(-((((.((((((.....((..((---.((((......))))......((((((((....))))))))))..))...-))))))))))). ( -33.40) >DroSim_CAF1 10433 95 + 1 CACUGC--------------------CGUCC-GAGAGUGGCCAUGCAUGAGGGC---UCCCAUAAAAUUGGGUCAAUUGCUGUUAACAAUUUGGCAGCGCAAUCUUU-UGGCCGUUUCGA ......--------------------....(-((((.((((((.....((..((---.((((......))))......((((((((....))))))))))..))...-))))))))))). ( -33.40) >DroEre_CAF1 15087 95 + 1 CACUGC--------------------CGUCC-GAGAGUGGCCAUGCAUGAGGGC---UCCCAUAAAAUUGGGUCAAUUGCUGUUAACAAUUUGGCAGGGCAAUCUUU-UGGCCGUUUCGA ......--------------------....(-((((.((((((.....((..((---(((((......)))).......(((((((....))))))))))..))...-))))))))))). ( -30.40) >DroWil_CAF1 13330 84 + 1 --CUGC--------------------UGU-------------AUGCAUGAGUGCGAGGCCCAUAAAAUUGGGUCAAUUGCUGUUAACAAUUUGGCAGCGCAAUCUUU-UGCCCGUUUCGA --.(((--------------------...-------------..)))((((.(((.((((((......))))))....((((((((....))))))))((((....)-))).))))))). ( -27.20) >DroYak_CAF1 10676 95 + 1 CACUGC--------------------CGUCC-GAGAGUGGCCAUGCAUGAGGGC---CCCCAUAAAAUUGGGUCAAUUGCUGUUAACAAUUUGGCAGCGCAAUCUUU-UGCCCGUUUCGA ((.(((--------------------.((((-....).)))...))))).((((---.((((......))))......((((((((....)))))))).........-.))))....... ( -27.60) >DroAna_CAF1 10190 117 + 1 CACACCUCCGAUCCCCGCCAGGCCUUCAUCCGGUGAGUGGCCAUGCAUGAGGGC---CCCCAUAAAAUUGGGUCAAUUGCUGUUAACAAUUUGGCAGCGCAAUCUCUUCGGCCGUUUCGA ........(((..(..(((.((((((((((.(((.....)))..).))))))))---)((((......))))......((((((((....))))))))...........))).)..))). ( -37.90) >consensus CACUGC____________________CGUCC_GAGAGUGGCCAUGCAUGAGGGC___UCCCAUAAAAUUGGGUCAAUUGCUGUUAACAAUUUGGCAGCGCAAUCUUU_UGGCCGUUUCGA ................................((((.((((((.....((..((....((((......))))......((((((((....))))))))))..))....)))))))))).. (-21.78 = -23.95 + 2.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:37 2006