Locus 2947

Sequence ID 2R_DroMel_CAF1
Location 10,173,880 – 10,173,978
Length 98
Max. P 0.963714
window4867

overview

Window 7

Location 10,173,880 – 10,173,978
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 96.94
Mean single sequence MFE -23.64
Consensus MFE -22.04
Energy contribution -21.60
Covariance contribution -0.44
Combinations/Pair 1.09
Mean z-score -1.58
Structure conservation index 0.93
SVM decision value 1.56
SVM RNA-class probability 0.963714
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10173880 98 - 20766785
GUAAUGCUGCUGAAAAAACACUUAAGCAAAAUGUUGUAUAUAUUUUGUAACCAAGUGAGGCGCAGAGUUGAGCUUGCCUCCAUUUAGUUCGUUAGAUA
.(((((..((((((.....((((..(((((((((.....)))))))))....))))(((((((........))..)))))..)))))).))))).... ( -23.00)
>DroSec_CAF1 2150 98 - 1
GUAAUGCUGCUGAAAAAACACUUAAGCAAAAUGUUGUAUAUAUUUUGUAACCAAGUGAGGCGCAGAGUUGAGCUUGCCUCCAUUUAGUUCGUUAGAUA
.(((((..((((((.....((((..(((((((((.....)))))))))....))))(((((((........))..)))))..)))))).))))).... ( -23.00)
>DroSim_CAF1 2176 98 - 1
GUAAUGCUGCUGAAAAAACACUUAAGCAAAAUGUUGUAUAUAUUUUGUAACCAAGUGAGGAGCAGAGUUGAACUUGCCUCCAUUUAGUUCGUUAGAUA
.(((((..((((((....(((((..(((((((((.....)))))))))....))))).((((..(((.....)))..)))).)))))).))))).... ( -25.30)
>DroEre_CAF1 3787 98 - 1
GUAAUGCUGCUGAAAAAACACUUAAGCAGAAUGUUGUAUAUAUUUUGUAACCGAGUGAGGCGCAGAGUUUAGCUUGCCUCCAUUUAGUUCGUUAGAUA
.(((((..((((((.....((((..(((((((((.....)))))))))....))))(((((((........))..)))))..)))))).))))).... ( -23.50)
>DroYak_CAF1 2220 98 - 1
GUAAUGCUGCUGAAAAAACACUUAAGCAGAAUGUUGUAUAUAUUUUGUAACCGAGUGAGGCGCAGAGUUUAGUUUGCCUCCAUUUAGUUCGUUAGAUA
.(((((..((((((....(((((..(((((((((.....)))))))))....))))).((.(((((......)))))..)).)))))).))))).... ( -23.40)
>consensus
GUAAUGCUGCUGAAAAAACACUUAAGCAAAAUGUUGUAUAUAUUUUGUAACCAAGUGAGGCGCAGAGUUGAGCUUGCCUCCAUUUAGUUCGUUAGAUA
.(((((..((((((.....((((..(((((((((.....)))))))))....))))((((((.((.......))))))))..)))))).))))).... (-22.04 = -21.60 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:36 2006