Locus 2945

Sequence ID 2R_DroMel_CAF1
Location 10,170,796 – 10,170,901
Length 105
Max. P 0.517224
window4865

overview

Window 5

Location 10,170,796 – 10,170,901
Length 105
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 91.41
Mean single sequence MFE -28.65
Consensus MFE -23.95
Energy contribution -24.45
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.40
Structure conservation index 0.84
SVM decision value -0.03
SVM RNA-class probability 0.517224
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10170796 105 + 20766785
GAAUUUGCAAAUUAGACGUCGCCAGGAGCGCUCUGGCAUAAAUGUGUUUUUGCAUCGUUAAAAAGUUGACAGAAACAUGGCUGUCAAUUUCUGUA---------------UUGGUAGAUU
.(((((((.(((((((....((((((.....))))))...(((((((....))).))))....(((((((((........))))))))))))).)---------------)).))))))) ( -27.50)
>DroSec_CAF1 10627 105 + 1
GAAUUUGCAAAUUAGACGUCGCCAGGAGCGUUCUGGCAUAAAUGUGUUUUUGCAUCGUUAAAAAGUUGACAGAAACAUGGCUGUCAAUUCCUGUA---------------UUGGUAGAUU
.(((((((......(((((((((((((...)))))))......(((((((((((.(........).)).)))))))))))).))).....(....---------------..)))))))) ( -27.50)
>DroSim_CAF1 10382 105 + 1
GAAUUUGCAAAUUAGACGUCGCCAGGAGCGUUCUGGCAUAAAUGUGUUUUUGCAUCGUUAAAAAGUUGACAGAAACAUGGCUGUCAAUUCCUGUA---------------UUGGUAGAUU
.(((((((......(((((((((((((...)))))))......(((((((((((.(........).)).)))))))))))).))).....(....---------------..)))))))) ( -27.50)
>DroYak_CAF1 11084 120 + 1
GAAUUUGCAAAUUAGACGUCGCCAGGAGCGCUGUGGCAUAAAUGUGUUUUUGCAUCGUUAAAAAGUUGACAGAAACAUGGCUGCCAAUUCCUGUAUUGCUGUUGGACGUAUUGGUAGAUU
.(((((((.......(((((..((((((.....(((((....((((((((((((.(........).)).))))))))))..))))).)))))).....(....))))))....))))))) ( -32.10)
>consensus
GAAUUUGCAAAUUAGACGUCGCCAGGAGCGCUCUGGCAUAAAUGUGUUUUUGCAUCGUUAAAAAGUUGACAGAAACAUGGCUGUCAAUUCCUGUA_______________UUGGUAGAUU
.(((((((......((((..((((((.....))))))......((((....))))))))....(((((((((........)))))))))........................))))))) (-23.95 = -24.45 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:34 2006