Locus 2940

Sequence ID 2R_DroMel_CAF1
Location 10,166,982 – 10,167,102
Length 120
Max. P 0.947878
window4849

overview

Window 9

Location 10,166,982 – 10,167,102
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.50
Mean single sequence MFE -37.34
Consensus MFE -35.44
Energy contribution -35.44
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.95
SVM decision value 1.38
SVM RNA-class probability 0.947878
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10166982 120 + 20766785
UUGACAGUCGUUGGCUCUGUUUGUCUGGCUGGCAAAAGUACGUGAGUGGUUCGUUUUAAUUACGAAUGACGGCGUACGAAUUGAGUGUUGUCUUCUGCAUUUUUAAAGGCCUCCAGAGUC
..(((((.........)))))..(((((..(((....((((((..((.((((((.......)))))).)).)))))).....((((((........))))))......))).)))))... ( -35.90)
>DroSec_CAF1 6784 120 + 1
UUGACAGUCGUUGGCUCUGUUUGUCUGGCUGGCCAAAGUACGUGAGUGGUUCGUUUUAAUUACGAAUGACGGCGUACGAAUUGAGUGUUGUCUUUUGCAUUUUUAAAGGCCUCCAGAGUC
..(((((.........)))))..(((((..((((...((((((..((.((((((.......)))))).)).)))))).....((((((........)))))).....)))).)))))... ( -39.40)
>DroSim_CAF1 6715 120 + 1
UUGACAGUCGUUGGCUCUGUUUGUCUGGCUGGCAAAAGUACGUGAGUGGUUCGUUUUAAUUACGAAUGACGGCGUACGAAUUGAGUGUUGUCUUCUGCAUUUUUAAAGGCCUCCAGAGUC
..(((((.........)))))..(((((..(((....((((((..((.((((((.......)))))).)).)))))).....((((((........))))))......))).)))))... ( -35.90)
>DroEre_CAF1 6874 120 + 1
UUGACAGUCGUUGGCUCUGUUUGUCUGGCUGGCCAAAGUACGUGAGUGGUUCGUUUUAAUUACGAAUGACGGCGUACGAAUUGAGUGUUGUCUUCUGCAUUUUUAAAGGCCUCCAGAGUC
..(((((.........)))))..(((((..((((...((((((..((.((((((.......)))))).)).)))))).....((((((........)))))).....)))).)))))... ( -39.40)
>DroYak_CAF1 6658 120 + 1
UUGACAGUCGUUGGCUCAGUUCGUCUGGCUGGCAAAAGUACGUGAGUGGUUCGUUUUAAUUACGAAUGACGGCGUACGAAUUGAGUGUUGUCUUCUGCAUUUUUAAAGGCCUCCAGAGUC
..(((((.(....((((((((((((.....)))....((((((..((.((((((.......)))))).)).)))))))))))))))))))))(((((................))))).. ( -36.09)
>consensus
UUGACAGUCGUUGGCUCUGUUUGUCUGGCUGGCAAAAGUACGUGAGUGGUUCGUUUUAAUUACGAAUGACGGCGUACGAAUUGAGUGUUGUCUUCUGCAUUUUUAAAGGCCUCCAGAGUC
..((((((.....))).......(((((..(((....((((((..((.((((((.......)))))).)).)))))).....((((((........))))))......))).)))))))) (-35.44 = -35.44 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:19 2006