Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,166,225 – 10,166,345 |
Length | 120 |
Max. P | 0.984510 |
Location | 10,166,225 – 10,166,345 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.58 |
Mean single sequence MFE | -20.57 |
Consensus MFE | -16.96 |
Energy contribution | -16.96 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.21 |
Structure conservation index | 0.82 |
SVM decision value | 1.98 |
SVM RNA-class probability | 0.984510 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10166225 120 + 20766785 CCCCUCAUCCCAUUUCCAUAGACAUUGCCAUUCCCAUUCCUAUUUCCAUUCCCAUUCUAUGUUCCCUUCACAUUGGCAGAUGCCCGAGUGCCAAGACUCGAUUUUAAUGGCACUUGAACU ................((((((.................................)))))).............(((....)))(((((((((..............))))))))).... ( -18.75) >DroSec_CAF1 5970 120 + 1 CCCCUCAUCCUAUUUCCAUUGCCAUUGCCUUUCCCAUUCCUAUUUCCAUUCCCAUUCUAUGUUCCCUUCACAUUGGCAGAUGCCCGAGUGCCAAGACUCGAUUUUAAUGGCACUUGAACU .............(((...((((((((...............................................(((....)))(((((......)))))....))))))))...))).. ( -19.80) >DroSim_CAF1 5910 120 + 1 CCCCUCAUCCCAUUUCCAUUGCCAUUGCCUUUCCCAUUCCUAUUUCCAUUCCCAUUCUAUGUUCCCUUCACAUUGGCAGAUGCCCGAGUGCCAAGACUCGAUUUUAAUGGCACUUGAACU .............(((...((((((((...............................................(((....)))(((((......)))))....))))))))...))).. ( -19.80) >DroEre_CAF1 6034 120 + 1 CAACUCAUCCCAUCUCCAUCUCCAUCUCCAUAGCCAUUCCCAUUCCCAUGCCCAUUCUAUGUUCCCUUCACUUUGGCAGAUGCCCGAGUGCCAAGACUCGAUUUUAAUGGCACUUGAACU ..........((((((((..........(((((.......(((....)))......)))))............))).)))))..(((((((((..............))))))))).... ( -21.81) >DroYak_CAF1 5832 120 + 1 CACCUCAUCCCAUCUCCAUCUCCAUUCCUAUAGCCAUUCCCAUUCGUAUGCCCAUCCUAGGUUCCCUUCACAUUGGCAGAGGCCCGAGUGCCAAGACUCGAUUUUAAUGGCACUUGAACU ..((((.................((....)).((((.............(((.......)))...........)))).))))..(((((((((..............))))))))).... ( -22.69) >consensus CCCCUCAUCCCAUUUCCAUCGCCAUUGCCAUUCCCAUUCCUAUUUCCAUUCCCAUUCUAUGUUCCCUUCACAUUGGCAGAUGCCCGAGUGCCAAGACUCGAUUUUAAUGGCACUUGAACU ............................................................((((..........(((....))).((((((((..............)))))))))))). (-16.96 = -16.96 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:17 2006