Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,165,773 – 10,165,893 |
Length | 120 |
Max. P | 0.918872 |
Location | 10,165,773 – 10,165,893 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.83 |
Mean single sequence MFE | -33.78 |
Consensus MFE | -30.28 |
Energy contribution | -30.20 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.09 |
Mean z-score | -1.65 |
Structure conservation index | 0.90 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.918872 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10165773 120 + 20766785 GGCAUACAACGAAAUGGAAUGUGUCUGGUGGAAAGUGCAGGAGUCGGAUUUGAUUGCAAGUUCCAUGGCGUAGAAAGUAAAAUGCCAAGUCACAUAUUAAUAUGCAGACGCCGUUAGCCG (((...((......))....(((((((((((((..((((...((((....))))))))..))))))(((((..........)))))..................))))))).....))). ( -33.50) >DroSec_CAF1 5511 120 + 1 GGCAUAAAGCGAAAUGGAAUGCGUCUGGGGGAAAGUGCAGGAGUCGGAUUUGAUUGCAAGUUCCAUGGCGUAGAAAGUAAAAUGGCAAGUCACAUAUUAAUAUGCAGACGCCGUUAGCCG (((.....(((..((((((((((.((.......))))).(.(((((....))))).)..)))))))..))).........((((((..(((.((((....))))..))))))))).))). ( -34.20) >DroSim_CAF1 5443 120 + 1 GGCAUAAAGCGAAAUGGAAUGCGUCUGGGGGAAAGUGCAGGAGUCGGAUUUGAUUGCAAGUUCCAUGGCGUAGAAAGUAAAAUGGCAAGUCACAUAUUAAUAUGCAGACGCCGUUAGCCG (((.....(((..((((((((((.((.......))))).(.(((((....))))).)..)))))))..))).........((((((..(((.((((....))))..))))))))).))). ( -34.20) >DroEre_CAF1 5581 120 + 1 GGCAUAAAGCGAAAUGGAAUGCGUCUGGGGGAAAGUGCAGGAGUCGGAUUUGAUUGCAAGUUCCAUGGCGUAGAAAGUAAAAUGCCAAGUCACAUAUUAAUAUGCAGACGCCGUUAGCUG .......(((..((((....(((((((.(((((..((((...((((....))))))))..)))).((((((..........))))))...............).))))))))))).))). ( -33.10) >DroYak_CAF1 5378 120 + 1 GGCAUAAAGCGAAAUGGAAUGCGUCUGGGGGAAAGUGCAGGAGUCGGAUUUGAUUGCAAGUUCCAUGGCGUAGAAAGUAAAAUGCCAAGUCACAUAUUAAUAUGCAGACGCCGUUAGCCG (((....((((.........(((((((.(((((..((((...((((....))))))))..)))).((((((..........))))))...............).))))))))))).))). ( -33.90) >consensus GGCAUAAAGCGAAAUGGAAUGCGUCUGGGGGAAAGUGCAGGAGUCGGAUUUGAUUGCAAGUUCCAUGGCGUAGAAAGUAAAAUGCCAAGUCACAUAUUAAUAUGCAGACGCCGUUAGCCG (((....((((.........(((((((..((((..((((...((((....))))))))..)))).((((((..........)))))).................))))))))))).))). (-30.28 = -30.20 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:16 2006