Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,722,758 – 1,722,870 |
Length | 112 |
Max. P | 0.789788 |
Location | 1,722,758 – 1,722,870 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 95.24 |
Mean single sequence MFE | -22.42 |
Consensus MFE | -19.10 |
Energy contribution | -19.43 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.46 |
Structure conservation index | 0.85 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.789788 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1722758 112 - 20766785 CUAACCCACAUAUCCGACCCGUUCGCCCCACCAUUAUUAUCCCUGGAACCAACUGCCCACCCCCACCACCGCUUUUGACGAAUUCCUUCGGUUGGGGUGAAUAAUAUGCUCU ....................((((((((((((.......((....))..(((..((..............))..)))............)).)))))))))).......... ( -21.44) >DroSec_CAF1 8026 112 - 1 CUAACCCACUUAUCCGACCCGUUGGCCCCACCAUUAUUAUCCCUGGAACCAACUCCCCACCCCCACCACCGCCUUCGACGAAUUCCUUCGGUUGGGGUGAAUAAUAUUCUCU ....................(((((..(((.............)))..)))))....((((((.(((..((....))..(((....)))))).))))))............. ( -24.02) >DroSim_CAF1 8026 112 - 1 CUAACCCACUUAUCCGUCCCGUUCGCCCCACCAUUAUUAUCCCUGGAACCAACUCCCCACCUCCACCACCGCUUUCGACGAAUUCCUUCGGUUGGGGUGAAUAAUAUUCUCU ....................((((((((((((............(((......))).......................(((....))))).)))))))))).......... ( -21.80) >consensus CUAACCCACUUAUCCGACCCGUUCGCCCCACCAUUAUUAUCCCUGGAACCAACUCCCCACCCCCACCACCGCUUUCGACGAAUUCCUUCGGUUGGGGUGAAUAAUAUUCUCU ....................((((((((((((...........(((..........)))....................(((....))))).)))))))))).......... (-19.10 = -19.43 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:44 2006