Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,152,065 – 10,152,175 |
Length | 110 |
Max. P | 0.670170 |
Location | 10,152,065 – 10,152,175 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 93.36 |
Mean single sequence MFE | -26.44 |
Consensus MFE | -21.20 |
Energy contribution | -21.88 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.06 |
Mean z-score | -1.55 |
Structure conservation index | 0.80 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670170 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10152065 110 - 20766785 AGAUUUGAAAAUUAAAUGAGUUUCGGGAUUGGCAGGAACCUAUGAAAUAUUCGAGUCACCGAAAACGGACAUUUGGGCCAGUUAAUUAGCUUUAUUUGGUUAAUUAACAG .((((((((.(((..(((.(((((..........))))).)))..))).)))))))).(((((........)))))....(((((((((((......))))))))))).. ( -28.00) >DroSec_CAF1 12556 110 - 1 AGAUUUGAAAAUUAAAUGAGUUUCGGGAUUGGCAGGAACCUAUGAAAUAUUCGAGCCACCGAAAACGGAGAUUUGGGCCAGUUAAUUAGCUUUAUUUGGUUAAUUAACGG ...(((((((.((....)).)))))))..((((((....)).........((((..(.(((....))).)..))))))))(((((((((((......))))))))))).. ( -24.20) >DroSim_CAF1 7485 110 - 1 AGAUUUGAAAAUUAAAUGAGUUUCGGGAUUGGCAGGAACCUAUGAAAUAUUCGAGCCACCGAAAACGGACAUUUGGGCCAGUUAAUUAGCUUUAUUUGGUUAAUUAACGG ...........(((((((.(((((((...((((((....)).(((.....))).))))))).))))...))))))).((.(((((((((((......))))))))))))) ( -26.50) >DroEre_CAF1 12815 108 - 1 AGAUUUGAAAAUUAAAUGAGUUUCGGGAUUGGCACGAACCUAUGUAAUAUUCGAGCCACCGAA-ACGGGCAUUUGG-CCAGUUAAUUAGCUUUAUUUGGGUAAUUAACCG ...........(((((((.(((((((...((((.((((...........)))).)))))))))-))...)))))))-...((((((((.((......)).)))))))).. ( -30.40) >DroYak_CAF1 7537 109 - 1 AGAUUUGAAAAUUAAAUGAGUUUCGGGAUUGGCAAGAACCUAUGCAAUAUUCGAGCCAACGAA-AUGGGCAUUUGGGAGAGUUAAUUAGCUUUAUUUGUGUAAUUAACUG ...........(((((((.((((((...(((((..(((...........)))..)))))))))-))...)))))))...(((((((((((.......)).))))))))). ( -23.10) >consensus AGAUUUGAAAAUUAAAUGAGUUUCGGGAUUGGCAGGAACCUAUGAAAUAUUCGAGCCACCGAAAACGGACAUUUGGGCCAGUUAAUUAGCUUUAUUUGGUUAAUUAACGG ...........(((((((.(((((((...((((..(((...........)))..))))))))).))...)))))))....(((((((((((......))))))))))).. (-21.20 = -21.88 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:59 2006