| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,151,406 – 10,151,501 |
| Length | 95 |
| Max. P | 0.991444 |
| Location | 10,151,406 – 10,151,501 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 76.29 |
| Mean single sequence MFE | -29.25 |
| Consensus MFE | -18.00 |
| Energy contribution | -18.64 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.62 |
| SVM decision value | 2.27 |
| SVM RNA-class probability | 0.991444 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10151406 95 + 20766785 GGGGCUGUCAACGAGCAGCC---AUGGCGUCAGCAAUUGCUGAUCUGCC-----ACCCACU-AGCCAAAGGCUGCCCACCAUC-------CACCACCCACUUGGCCACCC--A- ((((((((......))))))---.((((((((((....))))))..)))-----).))...-.(((((.((.((.........-------...)).))..))))).....--.- ( -31.30) >DroPse_CAF1 7285 94 + 1 GGUGCUGUCAACAAGCAGCCUCGGUGGCAUCAGCAAUUGCGGAUCUCCAGUACCCCCCACA------------GCCCACAGCC-------CACAGCCCACACCCACA-CCCUAU ((.(((((.........((....((((.....((....))((....))........)))).------------))........-------.))))))).........-...... ( -18.67) >DroSec_CAF1 11857 95 + 1 GGGGCUGUCAACGAGCAGCC---AUGGCGUCAGCAAUUGCUGAUCUGCC-----ACCCACU-CUCCAAUGGCUGCCCACCACC-------CACCAGCCACUUGGCCACCC--A- ((((((((......))))))---.((((((((((....))))))..)))-----).))...-..((((((((((.........-------...)))))).))))......--.- ( -36.40) >DroSim_CAF1 6847 102 + 1 GGGGCUGUCAACGAGCAGCC---AUGGCGUCAGCAAUUGCUGAUCUGCC-----ACCCACU-CUCCAAUGGCUGCCCACCACCCACUACCCACCACCCACUUGGCCACCC--A- (((.........(.((((((---(((((((((((....))))))..)))-----)......-......))))))).)...............(((......)))...)))--.- ( -31.70) >DroEre_CAF1 12160 95 + 1 GGGGCUGUCAACGAGCAGCC---AUGGCGUCAGCAAUUGCUGAUCUGCC-----ACCCACCACACCCACUG-CACCCACUACC-------CACUGCCCACUUGGCCACCC--A- ((((((((......))))))---.((((((((((....))))))..)))-----)....))..........-...........-------....(((.....))).....--.- ( -28.20) >consensus GGGGCUGUCAACGAGCAGCC___AUGGCGUCAGCAAUUGCUGAUCUGCC_____ACCCACU_CUCCAAUGGCUGCCCACCACC_______CACCACCCACUUGGCCACCC__A_ ((((((((......)))))......(((((((((....))))))..)))......)))........................................................ (-18.00 = -18.64 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:57 2006