Locus 2926

Sequence ID 2R_DroMel_CAF1
Location 10,149,265 – 10,149,369
Length 104
Max. P 0.795483
window4824

overview

Window 4

Location 10,149,265 – 10,149,369
Length 104
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.94
Mean single sequence MFE -23.63
Consensus MFE -8.45
Energy contribution -10.70
Covariance contribution 2.25
Combinations/Pair 1.24
Mean z-score -2.56
Structure conservation index 0.36
SVM decision value 0.60
SVM RNA-class probability 0.795483
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10149265 104 - 20766785
GGGUUAAUUGCAUUAGAGUUAUGACAAUUGCCAGCAAAUUUGA----GUUGGCAAA-AAA-----UAGCGAA------AAGCAAAUACGAAAUGUGAUUGCGAAAACAAACUCAAAUACA
(((((............(((((.....((((((((........----)))))))).-..)-----))))...------..((((.(((.....))).)))).......)))))....... ( -24.20)
>DroPse_CAF1 5392 105 - 1
GGGUUAAUUGCAUUAGAGUUAUGACAAUUGCCAGCGAAUUUGACUUUGUUGGCAGA-A--------AGCGAA------AAGCAAACACGAAAUCUGAUUGCGAAAAUCAACUCAAAUAAA
(((((..((((((((((.(..((....(((((((((((......))))))))))).-.--------.((...------..))...))..)..))))).))))).....)))))....... ( -27.40)
>DroEre_CAF1 10035 105 - 1
GGGUUAAUUGCAUUAGAGUUAUGACAAUUGCCAGCAAAUUUGA----GUUGGCAAAAAAA-----UAGCGAA------AAGCAAAUACGAAAUGUGAUUGCGAAAACAAACUCAAAUACA
(((((............(((((.....((((((((........----))))))))....)-----))))...------..((((.(((.....))).)))).......)))))....... ( -24.60)
>DroWil_CAF1 17399 108 - 1
GGGUUAAUUGCAUUAAAGUUAUGACAAUUGCCAGCAAAUUUGC----CAAAACAAA-AUGUUUUACAGGGCC------AAAAAGGCAUCAAAUCCGAUUGCAAUAAUCAACUGAAUU-CA
.(((.((((((((.......))).)))))))).(((....)))----.(((((...-..))))).(((.(((------.....))).........(((((...)))))..)))....-.. ( -18.70)
>DroAna_CAF1 4737 98 - 1
GGGUUAAUUGCAUUAGAGUUAUGACAAUUGCCAGCAAAUUUGA----CUUA------AAA-----AAGCAGAAUGGGCGAGCAAAUACGAAAUCUGAAUGCGAAAAUCAGCGC-------
.((((..((((((((((((....))..((((..((..((((..----(((.------...-----)))..))))..))..))))........)))).)))))).)))).....------- ( -19.50)
>DroPer_CAF1 5422 105 - 1
GGGUUAAUUGCAUUAGAGUUAUGACAAUUGCCAGCGAAUUUGACUUUGUUGGCAGA-A--------AGCGAA------AAGCAAACACGAAAUCUGAUUGCGAAAAUCAACUCAAAUAAA
(((((..((((((((((.(..((....(((((((((((......))))))))))).-.--------.((...------..))...))..)..))))).))))).....)))))....... ( -27.40)
>consensus
GGGUUAAUUGCAUUAGAGUUAUGACAAUUGCCAGCAAAUUUGA____GUUGGCAAA_AAA______AGCGAA______AAGCAAACACGAAAUCUGAUUGCGAAAAUCAACUCAAAUACA
(((((..((((......((....))..((((((((............))))))))............)))).........((((.((.......)).)))).......)))))....... ( -8.45 = -10.70 +   2.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:54 2006