Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,141,094 – 10,141,276 |
Length | 182 |
Max. P | 0.978584 |
Location | 10,141,094 – 10,141,206 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 89.71 |
Mean single sequence MFE | -33.15 |
Consensus MFE | -30.98 |
Energy contribution | -30.55 |
Covariance contribution | -0.43 |
Combinations/Pair | 1.15 |
Mean z-score | -1.87 |
Structure conservation index | 0.93 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.871588 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10141094 112 + 20766785 GGUUGCUCACGUAAUA------UAACUCUCUGA-AAGGGGAAUCCCUUUGAAGAUUCCACUCGCAGGACUCGAGCGCUCACUUUCCCCAUCCCGUGUCCUGCGAAGAGUAUUCAAAGGC .(((((....))))).------....(((((..-..)))))...((((((((.((((...(((((((((.((....................)).))))))))).)))).)))))))). ( -37.75) >DroSim_CAF1 6214 112 + 1 GGUUACUCACGUAAUA------UAACUCUCUGA-AAGGGGAAUCCCUUUGAAGAUUCCACUCGCAGGACUCGAGCGCUCACUUUCCCCAUCCCGUGUCCUGUGAAGAGUAUUCAAAGGC .(((((....))))).------....(((((..-..)))))...((((((((.((((...(((((((((.((....................)).))))))))).)))).)))))))). ( -35.85) >DroYak_CAF1 6239 119 + 1 GGUUAUUCACGUAAUACGAGUACAACUCUCUAAAAAGGGGAAUCCCUUUGAACAUUCCACUCGCAGGACUUGAGCGCUCACUUUCCCCAUUCUGUGUCCUGCUAAGAGCAUUCAAAGGC ...(((((.........)))))....(((((.....)))))...((((((((..(((.....(((((((..(((...............)))...)))))))...)))..)))))))). ( -25.86) >consensus GGUUACUCACGUAAUA______UAACUCUCUGA_AAGGGGAAUCCCUUUGAAGAUUCCACUCGCAGGACUCGAGCGCUCACUUUCCCCAUCCCGUGUCCUGCGAAGAGUAUUCAAAGGC .(((((....)))))...........(((((.....)))))...((((((((.((((...(((((((((.((....................)).))))))))).)))).)))))))). (-30.98 = -30.55 + -0.43)
Location | 10,141,127 – 10,141,236 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 95.11 |
Mean single sequence MFE | -30.47 |
Consensus MFE | -27.34 |
Energy contribution | -27.35 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.11 |
Mean z-score | -2.52 |
Structure conservation index | 0.90 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10141127 109 + 20766785 AAUCCCUUUGAAGAUUCCACUCGCAGGACUCGAGCGCUCACUUUCCCCAUCCCGUGUCCUGCGAAGAGUAUUCAAAGGCAAACUUUGACCGCUUUUUGCCAGGACCUAC ..(((.((((((.((((...(((((((((.((....................)).))))))))).)))).))))))((((((............)))))).)))..... ( -32.55) >DroSim_CAF1 6247 109 + 1 AAUCCCUUUGAAGAUUCCACUCGCAGGACUCGAGCGCUCACUUUCCCCAUCCCGUGUCCUGUGAAGAGUAUUCAAAGGCAAACUUUGACCGCUUUUUGCGAGGACCUAC ....((((((((.((((...(((((((((.((....................)).))))))))).)))).))))))))...........(((.....)))......... ( -31.55) >DroYak_CAF1 6279 109 + 1 AAUCCCUUUGAACAUUCCACUCGCAGGACUUGAGCGCUCACUUUCCCCAUUCUGUGUCCUGCUAAGAGCAUUCAAAGGCAAACUUUGACCGCUUUUUGCCAGGACCUAC ......................((((((...(((......)))......))))))(((((((.((((((..((((((.....))))))..)))))).).)))))).... ( -27.30) >consensus AAUCCCUUUGAAGAUUCCACUCGCAGGACUCGAGCGCUCACUUUCCCCAUCCCGUGUCCUGCGAAGAGUAUUCAAAGGCAAACUUUGACCGCUUUUUGCCAGGACCUAC ....((((((((.((((...(((((((((.((....................)).))))))))).)))).))))))))..........((((.....))..))...... (-27.34 = -27.35 + 0.01)
Location | 10,141,167 – 10,141,276 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 93.27 |
Mean single sequence MFE | -33.73 |
Consensus MFE | -31.10 |
Energy contribution | -30.67 |
Covariance contribution | -0.43 |
Combinations/Pair | 1.15 |
Mean z-score | -2.99 |
Structure conservation index | 0.92 |
SVM decision value | 1.82 |
SVM RNA-class probability | 0.978584 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10141167 109 + 20766785 CUUUCCCCAUCCCGUGUCCUGCGAAGAGUAUUCAAAGGCAAACUUUGACCGCUUUUUGCCAGGACCUACACUGGCAGAGAUUUCUCUUUGUUGACAGGCACGCGACUUU ............((((((((((((((((...((((((.....))))))....((((((((((........))))))))))...)))))))....)))).)))))..... ( -37.90) >DroSim_CAF1 6287 109 + 1 CUUUCCCCAUCCCGUGUCCUGUGAAGAGUAUUCAAAGGCAAACUUUGACCGCUUUUUGCGAGGACCUACACUAGCAGAGAUUUCUCUUUGUUGACAGGCACGCGACUUU .........((.(((((((((..((((((..((((((.....))))))..))))))..).))))(((....(((((((((....)))))))))..))))))).)).... ( -34.60) >DroYak_CAF1 6319 109 + 1 CUUUCCCCAUUCUGUGUCCUGCUAAGAGCAUUCAAAGGCAAACUUUGACCGCUUUUUGCCAGGACCUACACUGCCAGAGAUUUCGCUUUGUUGACAAUCACGCGACUUU .........(((((.(((((((.((((((..((((((.....))))))..)))))).).)))))).........)))))...((((.(((....)))....)))).... ( -28.70) >consensus CUUUCCCCAUCCCGUGUCCUGCGAAGAGUAUUCAAAGGCAAACUUUGACCGCUUUUUGCCAGGACCUACACUGGCAGAGAUUUCUCUUUGUUGACAGGCACGCGACUUU .........((.(((((((((((((((((..((((((.....))))))..))))))))).)))))......((((((((......))))))))......))).)).... (-31.10 = -30.67 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:51 2006