Locus 2923

Sequence ID 2R_DroMel_CAF1
Location 10,140,697 – 10,140,812
Length 115
Max. P 0.953156
window4818

overview

Window 8

Location 10,140,697 – 10,140,812
Length 115
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.81
Mean single sequence MFE -32.00
Consensus MFE -28.12
Energy contribution -28.12
Covariance contribution 0.00
Combinations/Pair 1.14
Mean z-score -2.15
Structure conservation index 0.88
SVM decision value 1.43
SVM RNA-class probability 0.953156
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10140697 115 - 20766785
UCCAU----CUGGCUCUUUGCCGUUCGUUUGCUGGCGUUCAGCCCAAUUUAAUAGUU-UUCGAUUUGUUGAAAAGCGAAUGCCAAAGCACAGAAAAUAAAUUGUCACAGAAAUGCCGGCC
....(----(((...(((((.(((((((((...(((.....)))...((((((((..-......))))))))))))))))).)))))..)))).........(((.((....))..))). ( -30.00)
>DroSim_CAF1 5816 116 - 1
UCCUU----CUGGCUCUUUGCCGUUCGUUUGCUGGCGUUCAGCCCAAUUUAAUAGUUUUUCGAUUUGUUGAAAAGCGAAUGCCAAAGCACAGAAAAUAAAUUGUCACAGAAAUGCCGGCC
.....----..(((.....)))........((((((((((....(((((((...(((((((((....)))))))))...(((....))).......))))))).....).))))))))). ( -30.80)
>DroYak_CAF1 5820 120 - 1
UCCCUUCUCUUUGUCCUUUGGCGUUCGUUUGCUGGCGUUCAGCCCAAUUUAAUAGUUUUUCGAUUUGUUGAAAAGCGAAUGCCAAAGCACAGAAAAUAAAUUGUCACAGAAAUGCCCGCC
.........(((((.(((((((((((.......(((.....)))..........(((((((((....)))))))))))))))))))).))))).............((....))...... ( -34.10)
>DroAna_CAF1 6122 116 - 1
UUCUU----CCAGUCCUUUGGCGUUCGUUUGCUGGCUUUCAGCCCAAUUUAAUAGUUUUUCGAUUUGUUGAAAAGCGAAUGCCAAAGCACAGAAAAUAAAUUGUCACAGAAAUACUGGCC
.....----(((((.(((((((((((....((((.....))))...........(((((((((....)))))))))))))))))))).((((........)))).........))))).. ( -33.10)
>consensus
UCCUU____CUGGCCCUUUGCCGUUCGUUUGCUGGCGUUCAGCCCAAUUUAAUAGUUUUUCGAUUUGUUGAAAAGCGAAUGCCAAAGCACAGAAAAUAAAUUGUCACAGAAAUGCCGGCC
.........(((((.(((((((((((((((((((.....))))....((((((((.........))))))))))))))))))))))).((((........)))).........))))).. (-28.12 = -28.12 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:48 2006